C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell growth regulator with ring finger domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216420 CGRRF1-001 ENSG00000100532 9606 + 14:54509828-54539309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216420
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216420 0.538±0.00 1.051±0.00 2.680±0.75 0.589±0.24 1.023±0.45 0.852±0.27 1.778±1.65 2.015±1.39 1.013±0.00 1.336±0.00 1.973±1.08 0.896±0.37 3.174±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0001 VISTA 14:53920865-54521777
CIL_00090Z CIL_00090Z_0001 VISTA 14:53923660-54524764
CIL_0000HK CIL_0000HK_0001 CGP 14:54474484-54539309
CIL_0004OT CIL_0004OT_0001 CGP 14:54509812-54793315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006950 TAS response to stress
GO:0007050 IEA cell cycle arrest
GO:0008270 IEA zinc ion binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068532 Cgrrf1-001 protein_coding Mus_musculus 0 992
ENSMUST00000133989 Cgrrf1-004 retained_intron Mus_musculus 0 671
ENSMUST00000133790 Cgrrf1-003 retained_intron Mus_musculus 0 464
ENSMUST00000140114 Cgrrf1-002 retained_intron Mus_musculus 0 348

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