C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alkB, alkylation repair homolog 1 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100601 ALKBH1 9606 - 14:77672404-77708020 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216489 ALKBH1-001 77672404-77708020 protein_coding
  ENST00000554097 ALKBH1-004 77691733-77704452 processed_transcript
  ENST00000555100 ALKBH1-003 77674103-77707992 nonsense_mediated_decay
  ENST00000557057 ALKBH1-002 77673075-77708010 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216489ENST00000554097ENST00000555100ENST00000557057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216489 0.435±0.00 0.410±0.00 0.375±0.00 0.783±0.35 0.716±0.00 1.216±0.01 0.556±0.09 0.890±0.05 0.470±0.27 1.112±0.36 0.534±0.00 1.066±0.23 1.579±0.43 2.081±0.75
ENST00000554097 N/A N/A 0.976±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.187±0.00 2.202±0.00
ENST00000555100 N/A N/A N/A N/A N/A 1.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557057 2.349±0.00 3.121±0.00 0.408±0.00 0.983±0.76 1.283±0.01 2.683±0.00 3.023±0.00 2.960±0.00 1.128±0.61 2.901±0.00 1.645±0.45 1.640±1.10 3.078±1.45 3.329±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0001 CGP 14:77505997-77708020
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0001701 IEA in utero embryonic development
GO:0001764 IEA neuron migration
GO:0001890 IEA placenta development
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IEA protein binding
GO:0005719 IEA nuclear euchromatin
GO:0005739 IDA mitochondrion
GO:0006281 IDA:IEA DNA repair
GO:0006307 IDA DNA dealkylation involved in DNA repair
GO:0008198 IDA ferrous iron binding
GO:0010468 IEA regulation of gene expression
GO:0030154 IEA cell differentiation
GO:0031175 IEA neuron projection development
GO:0042056 IEA chemoattractant activity
GO:0042245 IDA RNA repair
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0048589 IEA developmental growth
GO:0050918 IEA positive chemotaxis
GO:0055114 IEA oxidation-reduction process
GO:0070579 IDA methylcytosine dioxygenase activity
GO:0070989 IDA oxidative demethylation
GO:0080111 IDA DNA demethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071164 alkbh1 alkB, alkylation repair homolog 1 (E. coli) protein_coding Danio_rerio
ENSMUSG00000079036 Alkbh1 alkB, alkylation repair homolog 1 (E. coli) protein_coding Mus_musculus

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