C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 1 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557057 ALKBH1-002 ENSG00000100601 9606 - 14:77673075-77708010 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000557057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000557057 2.349±0.00 3.121±0.00 0.408±0.00 0.983±0.76 1.283±0.01 2.683±0.00 3.023±0.00 2.960±0.00 1.128±0.61 2.901±0.00 1.645±0.45 1.640±1.10 3.078±1.45 3.329±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0001 CGP 14:77505997-77708020
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159079 Alkbh1-005 nonsense_mediated_decay Mus_musculus 0 979
ENSMUST00000161712 Alkbh1-002 nonsense_mediated_decay Mus_musculus 0 833
ENSMUST00000162961 Alkbh1-001 protein_coding Mus_musculus 0 833
ENSMUST00000162247 Alkbh1-004 nonsense_mediated_decay Mus_musculus 0 627
ENSMUST00000160113 Alkbh1-003 nonsense_mediated_decay Mus_musculus 0 627
ENSMUST00000176758 Alkbh1-010 processed_transcript Mus_musculus 0 425
ENSMUST00000160687 Alkbh1-007 protein_coding Mus_musculus 0 390
ENSMUST00000160919 Alkbh1-008 processed_transcript Mus_musculus 0 363

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