C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alkB, alkylation repair homolog 1 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079036 Alkbh1 10090 - 12:87425840-87444017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091090 Alkbh1-011 87442683-87444017 retained_intron
  ENSMUST00000159079 Alkbh1-005 87428810-87443828 nonsense_mediated_decay
  ENSMUST00000160113 Alkbh1-003 87428077-87443826 nonsense_mediated_decay
  ENSMUST00000160687 Alkbh1-007 87429121-87438559 protein_coding
  ENSMUST00000160850 Alkbh1-006 87433257-87443839 retained_intron
  ENSMUST00000160919 Alkbh1-008 87431430-87441726 processed_transcript
  ENSMUST00000161712 Alkbh1-002 87428080-87443836 nonsense_mediated_decay
  ENSMUST00000162247 Alkbh1-004 87428077-87443828 nonsense_mediated_decay
  ENSMUST00000162961 Alkbh1-001 87426169-87443839 protein_coding
  ENSMUST00000162986 Alkbh1-009 87433246-87443833 nonsense_mediated_decay
  ENSMUST00000176758 Alkbh1-010 87425840-87429437 processed_transcript
  ENSMUST00000185301 Alkbh1-201 87443511-87443918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryTestisENSMUST00000159079ENSMUST00000160113ENSMUST00000161712ENSMUST00000162247ENSMUST00000162961ENSMUST00000176758
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary Testis
ENSMUST00000159079 N/A 6.631±1.03 N/A 4.423±0.02 3.971±0.86 N/A N/A 7.052±1.87 N/A
ENSMUST00000160113 5.673±0.00 3.023±0.44 N/A 4.591±1.33 3.304±1.08 9.580±4.96 3.726±0.56 5.277±1.10 5.639±0.13
ENSMUST00000161712 N/A N/A N/A 3.571±0.00 N/A 3.386±0.61 N/A 5.427±1.51 N/A
ENSMUST00000162247 N/A 3.457±0.97 N/A 4.499±0.00 2.840±0.47 2.014±0.17 N/A 5.985±1.45 N/A
ENSMUST00000162961 N/A 1.772±0.00 5.430±0.53 2.313±0.52 N/A N/A 1.945±0.00 2.890±0.10 2.743±0.03
ENSMUST00000176758 N/A N/A N/A N/A 2.845±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017
CIL_0004TV CIL_0004TV_0002 CGP 12:87425840-87452206

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0001701 IMP in utero embryonic development
GO:0001764 IDA neuron migration
GO:0001890 IMP placenta development
GO:0003906 ISS DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IPI protein binding
GO:0005719 IDA nuclear euchromatin
GO:0005739 ISS mitochondrion
GO:0006281 ISS DNA repair
GO:0006307 ISS DNA dealkylation involved in DNA repair
GO:0008198 ISS ferrous iron binding
GO:0010468 IMP regulation of gene expression
GO:0030154 IMP cell differentiation
GO:0031175 IDA neuron projection development
GO:0042056 IDA chemoattractant activity
GO:0042245 ISS RNA repair
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0048589 IMP developmental growth
GO:0050918 IDA positive chemotaxis
GO:0070579 ISS methylcytosine dioxygenase activity
GO:0070989 ISS oxidative demethylation
GO:0080111 ISS DNA demethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071164 alkbh1 alkB, alkylation repair homolog 1 (E. coli) protein_coding Danio_rerio
ENSG00000100601 ALKBH1 alkB, alkylation repair homolog 1 (E. coli) protein_coding Homo_sapiens

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