C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 1 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216489 ALKBH1-001 ENSG00000100601 9606 - 14:77672404-77708020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216489 0.435±0.00 0.410±0.00 0.375±0.00 0.783±0.35 0.716±0.00 1.216±0.01 0.556±0.09 0.890±0.05 0.470±0.27 1.112±0.36 0.534±0.00 1.066±0.23 1.579±0.43 2.081±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TW CIL_0004TW_0001 CGP 14:77505997-77708020
CIL_0004TV CIL_0004TV_0001 CGP 14:77672404-77761104

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0001701 IEA in utero embryonic development
GO:0001764 IEA neuron migration
GO:0001890 IEA placenta development
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IEA protein binding
GO:0005719 IEA nuclear euchromatin
GO:0005739 IDA mitochondrion
GO:0006281 IDA:IEA DNA repair
GO:0006307 IDA DNA dealkylation involved in DNA repair
GO:0008198 IDA ferrous iron binding
GO:0010468 IEA regulation of gene expression
GO:0030154 IEA cell differentiation
GO:0031175 IEA neuron projection development
GO:0042056 IEA chemoattractant activity
GO:0042245 IDA RNA repair
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0048589 IEA developmental growth
GO:0050918 IEA positive chemotaxis
GO:0055114 IEA oxidation-reduction process
GO:0070579 IDA methylcytosine dioxygenase activity
GO:0070989 IDA oxidative demethylation
GO:0080111 IDA DNA demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162961 Alkbh1-001 protein_coding Mus_musculus 0 1188
ENSMUST00000161712 Alkbh1-002 nonsense_mediated_decay Mus_musculus 0 1098
ENSMUST00000159079 Alkbh1-005 nonsense_mediated_decay Mus_musculus 0 833
ENSMUST00000162247 Alkbh1-004 nonsense_mediated_decay Mus_musculus 0 627
ENSMUST00000160113 Alkbh1-003 nonsense_mediated_decay Mus_musculus 0 627
ENSMUST00000160919 Alkbh1-008 processed_transcript Mus_musculus 0 625
ENSMUST00000176758 Alkbh1-010 processed_transcript Mus_musculus 0 425
ENSMUST00000160687 Alkbh1-007 protein_coding Mus_musculus 0 390

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