C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: papilin, proteoglycan-like sulfated glycoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100767 PAPLN 9606 + 14:73237497-73274640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216658 PAPLN-004 73237580-73273365 nonsense_mediated_decay
  ENST00000340738 PAPLN-001 73237497-73274640 protein_coding
  ENST00000554301 PAPLN-002 73239616-73272754 protein_coding
  ENST00000554314 PAPLN-012 73261166-73264576 processed_transcript
  ENST00000554527 PAPLN-013 73268379-73272933 retained_intron
  ENST00000555035 PAPLN-011 73249776-73251018 retained_intron
  ENST00000555123 PAPLN-007 73237579-73273365 nonsense_mediated_decay
  ENST00000555445 PAPLN-003 73239625-73273003 protein_coding
  ENST00000555700 PAPLN-008 73262050-73274623 retained_intron
  ENST00000557061 PAPLN-009 73261156-73274620 nonsense_mediated_decay
  ENST00000559759 PAPLN-014 73262500-73274620 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000216658ENST00000340738ENST00000554301ENST00000555445ENST00000555700ENST00000557061ENST00000559759
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000216658 N/A N/A 1.409±0.00 N/A N/A N/A N/A N/A 0.544±0.00 0.281±0.00 N/A N/A N/A
ENST00000340738 N/A 7.697±0.00 N/A 0.992±0.00 N/A 1.316±0.00 0.439±0.00 N/A 1.808±0.00 N/A 1.560±0.79 N/A 3.535±0.00
ENST00000554301 0.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555445 N/A N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.735±0.00
ENST00000557061 N/A N/A N/A N/A 0.893±0.19 N/A N/A N/A 0.765±0.00 N/A N/A N/A N/A
ENST00000559759 0.758±0.00 13.083±0.00 N/A 1.806±0.00 1.375±0.00 2.394±0.00 0.379±0.04 9.515±0.00 2.220±0.00 0.507±0.00 5.197±1.07 2.060±1.43 4.309±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0001 VISTA 14:72878760-73482269
CIL_0001TQ CIL_0001TQ_0001 CGP 14:73136418-73274640
CIL_0001TR CIL_0001TR_0001 CGP 14:73237497-73463642

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity
GO:0008270 IEA zinc ion binding
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027867 paplna papilin a, proteoglycan-like sulfated glycoprotein protein_coding Danio_rerio
ENSMUSG00000021223 Papln papilin, proteoglycan-like sulfated glycoprotein protein_coding Mus_musculus

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