C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec23 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307712 SEC23A-001 ENSG00000100934 9606 - 14:39031920-39103528 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307712
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307712 20.439±0.00 15.349±0.00 8.733±5.66 12.332±9.05 23.423±0.00 11.367±0.00 7.795±4.18 19.904±0.00 10.569±0.00 6.325±4.13 12.916±6.75 6.174±0.33 13.805±8.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0001 CGP 14:38254103-39109646
CIL_0003VW CIL_0003VW_0001 CGP 14:39031919-39136973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IPI protein binding
GO:0005783 TAS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA:TAS ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0016192 TAS vesicle-mediated transport
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 IEA COPII vesicle coat
GO:0030134 IEA ER to Golgi transport vesicle
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021375 Sec23a-001 protein_coding Mus_musculus 0 3258
ENSMUST00000165134 Sec23a-004 protein_coding Mus_musculus 0 2712
ENSMUST00000119678 Gm11862-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000154399 Sec23a-003 retained_intron Mus_musculus 0 374
ENSMUST00000134223 Sec23a-002 retained_intron Mus_musculus 0 315
ENSMUST00000169976 Sec23a-005 retained_intron Mus_musculus 2e-36 159

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