C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec23 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545328 SEC23A-006 ENSG00000100934 9606 - 14:39032941-39103235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000545328
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000545328 4.840±0.00 0.980±0.00 6.975±0.00 6.851±0.00 8.488±0.00 5.189±1.82 3.052±0.00 16.271±0.00 5.686±0.00 4.988±0.49 9.927±0.00 1.473±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VV CIL_0003VV_0001 CGP 14:38254103-39109646
CIL_0003VW CIL_0003VW_0001 CGP 14:39031919-39136973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0030127 IEA COPII vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165134 Sec23a-004 protein_coding Mus_musculus 0 3120
ENSMUST00000021375 Sec23a-001 protein_coding Mus_musculus 0 2712
ENSMUST00000154399 Sec23a-003 retained_intron Mus_musculus 0 374
ENSMUST00000134223 Sec23a-002 retained_intron Mus_musculus 0 315
ENSMUST00000119678 Gm11862-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000169976 Sec23a-005 retained_intron Mus_musculus 1e-36 159

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