C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rab geranylgeranyltransferase, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100949 RABGGTA 9606 - 14:24265538-24271739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216840 RABGGTA-002 24265538-24271739 protein_coding
  ENST00000399409 RABGGTA-003 24265538-24271599 protein_coding
  ENST00000543002 RABGGTA-006 24267904-24271183 retained_intron
  ENST00000558376 RABGGTA-001 24265557-24271549 nonsense_mediated_decay
  ENST00000558534 RABGGTA-016 24269288-24271583 processed_transcript
  ENST00000558649 RABGGTA-013 24266605-24268386 retained_intron
  ENST00000558936 RABGGTA-018 24269346-24270444 retained_intron
  ENST00000558954 RABGGTA-020 24269660-24271597 processed_transcript
  ENST00000559551 RABGGTA-007 24265552-24271556 retained_intron
  ENST00000559586 RABGGTA-017 24269374-24271611 processed_transcript
  ENST00000559850 RABGGTA-014 24266786-24268182 retained_intron
  ENST00000559974 RABGGTA-008 24265556-24271549 nonsense_mediated_decay
  ENST00000560127 RABGGTA-019 24269629-24271538 nonsense_mediated_decay
  ENST00000560163 RABGGTA-021 24269955-24271516 processed_transcript
  ENST00000560207 RABGGTA-022 24270349-24271404 retained_intron
  ENST00000560243 RABGGTA-010 24265542-24268164 nonsense_mediated_decay
  ENST00000560521 RABGGTA-009 24265538-24268163 protein_coding
  ENST00000560777 RABGGTA-012 24265568-24270001 protein_coding
  ENST00000560871 RABGGTA-015 24266817-24269149 processed_transcript
  ENST00000560998 RABGGTA-005 24265570-24271510 retained_intron
  ENST00000561055 RABGGTA-011 24265538-24267708 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216840ENST00000399409ENST00000543002ENST00000558376ENST00000558936ENST00000559551ENST00000559586ENST00000559974ENST00000560243ENST00000560521ENST00000560871ENST00000560998ENST00000561055
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216840 N/A N/A N/A N/A N/A N/A 0.851±0.14 0.109±0.00 0.320±0.00 0.362±0.00 N/A 2.822±1.66 9.322±3.65 N/A
ENST00000399409 3.212±0.00 5.645±0.00 N/A 2.462±2.21 3.127±2.57 2.570±1.57 1.538±1.18 12.800±0.00 1.146±0.99 1.651±1.38 3.977±0.00 4.212±0.78 2.783±0.70 7.103±3.60
ENST00000543002 N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A
ENST00000558376 1.558±0.00 2.637±0.00 0.285±0.00 2.860±1.00 5.937±0.00 N/A 1.722±0.00 N/A 2.774±0.00 0.339±0.00 6.352±0.00 N/A N/A 5.432±0.00
ENST00000558936 N/A N/A N/A N/A N/A N/A N/A 1.585±0.00 N/A N/A 3.040±0.00 N/A N/A N/A
ENST00000559551 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.00 N/A N/A N/A N/A
ENST00000559586 N/A N/A 0.986±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559974 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 1.066±0.00 N/A 3.007±0.00 N/A N/A
ENST00000560243 N/A N/A N/A N/A N/A N/A N/A N/A 2.652±0.00 N/A N/A N/A N/A N/A
ENST00000560521 N/A N/A N/A N/A 7.986±0.00 2.319±0.00 N/A N/A N/A N/A 5.579±0.00 N/A N/A N/A
ENST00000560871 N/A 5.328±0.00 N/A N/A N/A N/A N/A N/A N/A 3.569±0.00 N/A 2.423±0.00 N/A 2.873±0.00
ENST00000560998 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.392±0.00 N/A 2.465±0.90 N/A 1.155±0.00
ENST00000561055 N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 N/A 2.949±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SH CIL_0001SH_0001 CGP 14:24249114-24271739
CIL_0002LB CIL_0002LB_0001 CGP 14:24265538-24299833

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004663 ISS:IEA Rab geranylgeranyltransferase activity
GO:0005515 IEA protein binding
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0006464 TAS cellular protein modification process
GO:0007601 TAS visual perception
GO:0008270 IEA zinc ion binding
GO:0008318 IEA protein prenyltransferase activity
GO:0017137 ISS Rab GTPase binding
GO:0018342 IEA protein prenylation
GO:0018344 ISS protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061024 rabggta Rab geranylgeranyltransferase, alpha subunit protein_coding Danio_rerio
ENSMUSG00000040472 Rabggta Rab geranylgeranyl transferase, a subunit protein_coding Mus_musculus

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