C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rab geranylgeranyl transferase, a subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040472 Rabggta 10090 - 14:55715873-55722257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062861 Rabggta-201 55715873-55722198 protein_coding
  ENSMUST00000163889 Rabggta-202 55716325-55722257 protein_coding
  ENSMUST00000169237 Rabggta-203 55715877-55722176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062861ENSMUST00000163889ENSMUST00000169237
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062861 1.800±0.27 3.893±0.71 2.133±0.52 5.535±0.00 4.997±0.92 4.808±1.04 1.490±0.03 6.311±2.18 3.880±1.53 4.781±0.38 1.620±0.64 4.328±1.18 6.388±1.28 2.422±0.00
ENSMUST00000163889 9.444±1.40 13.404±1.49 5.484±0.62 9.341±3.26 8.925±2.42 12.197±1.95 6.568±1.65 18.585±5.37 12.973±6.29 10.456±0.79 2.728±0.49 12.532±5.74 12.054±5.67 9.515±4.53
ENSMUST00000169237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SH CIL_0001SH_0002 CGP 14:55700009-55722257
CIL_0002LB CIL_0002LB_0002 CGP 14:55715873-55745690

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004663 IMP Rab geranylgeranyltransferase activity
GO:0005968 ISS Rab-protein geranylgeranyltransferase complex
GO:0008270 IEA zinc ion binding
GO:0017137 ISS Rab GTPase binding
GO:0018344 IMP protein geranylgeranylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061024 rabggta Rab geranylgeranyltransferase, alpha subunit protein_coding Danio_rerio
ENSG00000100949 RABGGTA Rab geranylgeranyltransferase, alpha subunit protein_coding Homo_sapiens

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