C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002LB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100949-ENSG00000157379 CGP 9606 14:24265538-24299833
GeneTranscriptPositionBiotype
ENSG00000100949 (RABGGTA)
Rab geranylgeranyltransferase, alpha subunit 		ENST00000216840 (RABGGTA-002) 24265538-24271739 protein_coding
ENST00000399409 (RABGGTA-003) 24265538-24271599 protein_coding
ENST00000543002 (RABGGTA-006) 24267904-24271183 retained_intron
ENST00000558376 (RABGGTA-001) 24265557-24271549 nonsense_mediated_decay
ENST00000558534 (RABGGTA-016) 24269288-24271583 processed_transcript
ENST00000558649 (RABGGTA-013) 24266605-24268386 retained_intron
ENST00000558936 (RABGGTA-018) 24269346-24270444 retained_intron
ENST00000558954 (RABGGTA-020) 24269660-24271597 processed_transcript
ENST00000559551 (RABGGTA-007) 24265552-24271556 retained_intron
ENST00000559586 (RABGGTA-017) 24269374-24271611 processed_transcript
ENST00000559850 (RABGGTA-014) 24266786-24268182 retained_intron
ENST00000559974 (RABGGTA-008) 24265556-24271549 nonsense_mediated_decay
ENST00000560127 (RABGGTA-019) 24269629-24271538 nonsense_mediated_decay
ENST00000560163 (RABGGTA-021) 24269955-24271516 processed_transcript
ENST00000560207 (RABGGTA-022) 24270349-24271404 retained_intron
ENST00000560243 (RABGGTA-010) 24265542-24268164 nonsense_mediated_decay
ENST00000560521 (RABGGTA-009) 24265538-24268163 protein_coding
ENST00000560777 (RABGGTA-012) 24265568-24270001 protein_coding
ENST00000560871 (RABGGTA-015) 24266817-24269149 processed_transcript
ENST00000560998 (RABGGTA-005) 24265570-24271510 retained_intron
ENST00000561055 (RABGGTA-011) 24265538-24267708 retained_intron
ENSG00000157379 (DHRS1)
dehydrogenase/reductase (SDR family) member 1 		ENST00000288111 (DHRS1-001) 24290598-24299833 protein_coding
ENST00000396813 (DHRS1-003) 24290600-24299460 protein_coding
ENST00000558114 (DHRS1-009) 24298711-24299769 retained_intron
ENST00000558340 (DHRS1-005) 24290603-24299743 nonsense_mediated_decay
ENST00000559084 (DHRS1-012) 24290598-24291125 retained_intron
ENST00000559088 (DHRS1-011) 24290598-24292643 processed_transcript
ENST00000559483 (DHRS1-010) 24292212-24299692 processed_transcript
ENST00000560991 (DHRS1-008) 24296662-24299751 retained_intron
ENST00000561137 (DHRS1-006) 24290600-24294656 retained_intron
ENST00000561273 (DHRS1-004) 24290636-24299761 retained_intron
ENST00000561281 (DHRS1-007) 24290598-24291921 retained_intron
CIL_0002LB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040472-ENSMUSG00000002332 CGP 10090 14:55715873-55745690
GeneTranscriptPositionBiotype
ENSMUSG00000002332 (Dhrs1)
dehydrogenase/reductase (SDR family) member 1 		ENSMUST00000002403 (Dhrs1-001) 55739022-55745690 protein_coding
ENSMUST00000128802 (Dhrs1-002) 55739020-55745599 retained_intron
ENSMUST00000142043 (Dhrs1-003) 55739234-55740144 retained_intron
ENSMUST00000155969 (Dhrs1-004) 55739020-55739660 retained_intron
ENSMUSG00000040472 (Rabggta)
Rab geranylgeranyl transferase, a subunit 		ENSMUST00000062861 (Rabggta-201) 55715873-55722198 protein_coding
ENSMUST00000163889 (Rabggta-202) 55716325-55722257 protein_coding
ENSMUST00000169237 (Rabggta-203) 55715877-55722176 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002LB_0001ENSG00000100949ENST00000216840ENST00000399409ENST00000543002ENST00000558376ENST00000558936ENST00000559551ENST00000559586ENST00000559974ENST00000560243ENST00000560521ENST00000560871ENST00000560998ENST00000561055ENSG00000157379ENST00000288111ENST00000396813ENST00000558114ENST00000558340ENST00000559084ENST00000559088ENST00000559483ENST00000560991ENST00000561137ENST00000561273ENST00000561281CIL_0002LB_0002ENSMUSG00000002332ENSMUST00000002403ENSMUST00000155969ENSMUSG00000040472ENSMUST00000062861ENSMUST00000163889ENSMUST00000169237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100949 ENST00000216840 N/A N/A N/A N/A N/A N/A 0.851±0.14 0.109±0.00 0.320±0.00 0.362±0.00 N/A 2.822±1.66 9.322±3.65 N/A
ENST00000399409 3.212±0.00 5.645±0.00 N/A 2.462±2.21 3.127±2.57 2.570±1.57 1.538±1.18 12.800±0.00 1.146±0.99 1.651±1.38 3.977±0.00 4.212±0.78 2.783±0.70 7.103±3.60
ENST00000543002 N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A
ENST00000558376 1.558±0.00 2.637±0.00 0.285±0.00 2.860±1.00 5.937±0.00 N/A 1.722±0.00 N/A 2.774±0.00 0.339±0.00 6.352±0.00 N/A N/A 5.432±0.00
ENST00000558534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558936 N/A N/A N/A N/A N/A N/A N/A 1.585±0.00 N/A N/A 3.040±0.00 N/A N/A N/A
ENST00000558954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559551 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.00 N/A N/A N/A N/A
ENST00000559586 N/A N/A 0.986±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559974 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 1.066±0.00 N/A 3.007±0.00 N/A N/A
ENST00000560127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560243 N/A N/A N/A N/A N/A N/A N/A N/A 2.652±0.00 N/A N/A N/A N/A N/A
ENST00000560521 N/A N/A N/A N/A 7.986±0.00 2.319±0.00 N/A N/A N/A N/A 5.579±0.00 N/A N/A N/A
ENST00000560777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560871 N/A 5.328±0.00 N/A N/A N/A N/A N/A N/A N/A 3.569±0.00 N/A 2.423±0.00 N/A 2.873±0.00
ENST00000560998 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.392±0.00 N/A 2.465±0.90 N/A 1.155±0.00
ENST00000561055 N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 N/A 2.949±0.00 N/A N/A N/A N/A
ENSG00000157379 ENST00000288111 10.190±0.00 4.968±0.00 N/A 1.778±0.00 9.550±0.00 1.778±0.51 1.301±0.00 10.133±0.00 5.240±0.00 2.610±1.51 N/A 12.217±1.52 14.924±2.21 10.749±2.64
ENST00000396813 N/A N/A N/A N/A 0.926±0.00 N/A 0.331±0.00 14.981±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558114 N/A 4.281±0.00 2.006±0.00 N/A N/A N/A 1.733±0.00 N/A N/A N/A 0.811±0.00 N/A N/A N/A
ENST00000558340 N/A N/A N/A N/A N/A N/A 0.535±0.00 N/A N/A 0.431±0.00 0.102±0.00 N/A N/A N/A
ENST00000559084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.383±0.00 N/A N/A N/A
ENST00000559088 N/A N/A N/A 0.582±0.00 N/A 2.047±0.00 1.214±0.00 6.261±0.00 N/A 3.180±0.00 N/A 8.577±0.00 N/A 5.440±0.00
ENST00000559483 N/A N/A N/A N/A N/A N/A N/A N/A 2.519±0.00 N/A N/A N/A N/A N/A
ENST00000560991 N/A N/A N/A N/A 2.461±0.00 N/A N/A 11.300±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561137 N/A N/A N/A 0.442±0.06 N/A N/A N/A N/A N/A 0.625±0.31 0.072±0.00 0.566±0.00 N/A N/A
ENST00000561273 N/A 2.128±0.00 0.464±0.00 1.138±0.00 1.753±0.00 0.783±0.00 0.471±0.00 3.931±0.00 0.625±0.26 1.253±0.00 N/A 3.123±1.54 1.291±0.00 1.290±0.00
ENST00000561281 N/A N/A 0.783±0.00 1.051±0.00 0.729±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002332 ENSMUST00000002403 29.022±4.16 16.916±2.72 31.810±5.31 21.670±3.82 21.772±2.88 25.029±1.19 18.967±0.58 54.198±2.48 52.165±28.79 28.956±2.58 17.468±1.35 22.473±3.70 19.229±1.38 110.413±32.70
ENSMUST00000128802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155969 N/A 14.995±2.01 N/A N/A 12.361±2.20 N/A 10.600±0.67 30.911±4.17 39.850±6.18 N/A 8.294±0.00 23.309±0.00 23.537±2.86 N/A
ENSMUSG00000040472 ENSMUST00000062861 1.800±0.27 3.893±0.71 2.133±0.52 5.535±0.00 4.997±0.92 4.808±1.04 1.490±0.03 6.311±2.18 3.880±1.53 4.781±0.38 1.620±0.64 4.328±1.18 6.388±1.28 2.422±0.00
ENSMUST00000163889 9.444±1.40 13.404±1.49 5.484±0.62 9.341±3.26 8.925±2.42 12.197±1.95 6.568±1.65 18.585±5.37 12.973±6.29 10.456±0.79 2.728±0.49 12.532±5.74 12.054±5.67 9.515±4.53
ENSMUST00000169237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A N/A N/A

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