C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217109 CSTF1-001 ENSG00000101138 9606 + 20:56392394-56406369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000217109
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000217109 1.618±0.00 1.710±0.00 1.120±0.47 0.717±0.13 0.999±0.00 0.620±0.00 1.932±0.00 0.515±0.00 0.538±0.00 1.821±1.14 1.515±0.82 3.252±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0001 VISTA 20:56155251-56756351
CIL_0002PV CIL_0002PV_0001 CGP 20:56369389-56406369
CIL_0005JF CIL_0005JF_0001 CGP 20:56392371-56460387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116375 Cstf1-001 protein_coding Mus_musculus 0 1609
ENSMUST00000151511 Cstf1-002 protein_coding Mus_musculus 0 571

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