C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonucleic acid export 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101146 RAE1 9606 + 20:57351010-57379211 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371242 RAE1-002 57351223-57379211 protein_coding
  ENST00000395840 RAE1-003 57351544-57379211 protein_coding
  ENST00000395841 RAE1-001 57351010-57379211 protein_coding
  ENST00000411894 RAE1-006 57351510-57366843 protein_coding
  ENST00000429339 RAE1-007 57351510-57366843 protein_coding
  ENST00000452119 RAE1-005 57351577-57356512 protein_coding
  ENST00000462438 RAE1-004 57371134-57378463 retained_intron
  ENST00000492498 RAE1-008 57351274-57378099 nonsense_mediated_decay
  ENST00000527947 RAE1-010 57351252-57375106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371242ENST00000395840ENST00000395841ENST00000429339ENST00000462438ENST00000492498ENST00000527947
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371242 1.880±0.00 1.171±0.00 N/A 6.822±0.00 2.157±0.00 3.056±0.00 N/A N/A 0.776±0.00 1.642±0.00 1.941±0.00 10.173±11.75 7.765±0.00 26.176±0.00
ENST00000395840 N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A N/A N/A 20.509±0.00
ENST00000395841 N/A N/A N/A 1.643±0.00 N/A N/A N/A N/A 0.462±0.00 0.753±0.00 N/A 3.014±0.16 1.716±0.47 N/A
ENST00000429339 N/A N/A N/A N/A N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A 5.180±0.00 46.263±0.00
ENST00000462438 N/A 0.963±0.00 0.471±0.00 N/A 0.434±0.00 N/A N/A 0.356±0.00 0.164±0.00 0.396±0.03 N/A 0.712±0.00 N/A N/A
ENST00000492498 1.665±0.00 N/A N/A 4.171±0.00 1.626±0.19 1.873±0.39 1.240±0.97 0.418±0.00 1.436±0.00 2.678±0.00 2.365±0.00 1.264±0.00 5.883±0.00 N/A
ENST00000527947 1.802±0.00 2.161±0.00 N/A N/A 1.127±0.00 1.593±0.00 N/A N/A N/A 1.194±0.00 0.912±0.17 3.656±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0002XR CIL_0002XR_0001 CGP 20:57329759-57379211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003723 TAS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005635 TAS nuclear envelope
GO:0005640 TAS nuclear outer membrane
GO:0005643 TAS nuclear pore
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 TAS cytoskeleton
GO:0005975 TAS carbohydrate metabolic process
GO:0006406 TAS mRNA export from nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008017 ISS microtubule binding
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS transmembrane transport
GO:0071407 IEA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007196 rae1 RAE1 RNA export 1 homolog (S. pombe) protein_coding Danio_rerio
ENSMUSG00000027509 Rae1 RAE1 RNA export 1 homolog (S. pombe) protein_coding Mus_musculus

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