C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonucleic acid export 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492498 RAE1-008 ENSG00000101146 9606 + 20:57351274-57378099 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000492498
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000492498 1.665±0.00 4.171±0.00 1.626±0.19 1.873±0.39 1.240±0.97 0.418±0.00 1.436±0.00 2.678±0.00 2.365±0.00 1.264±0.00 5.883±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0002XR CIL_0002XR_0001 CGP 20:57329759-57379211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029013 Rae1-001 protein_coding Mus_musculus 0 752
ENSMUST00000132212 Rae1-002 protein_coding Mus_musculus 0 726
ENSMUST00000124793 Rae1-003 retained_intron Mus_musculus 0 392

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