C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonucleic acid export 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395841 RAE1-001 ENSG00000101146 9606 + 20:57351010-57379211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungOvaryPlacentaENST00000395841
Transcript ID Brain Liver Lung Ovary Placenta
ENST00000395841 1.643±0.00 0.462±0.00 0.753±0.00 3.014±0.16 1.716±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0001 VISTA 20:56856738-57458908
CIL_0008TD CIL_0008TD_0001 VISTA 20:56859467-57462541
CIL_0008HJ CIL_0008HJ_0001 VISTA 20:57109440-57710361
CIL_0008BA CIL_0008BA_0001 VISTA 20:57139654-57744237
CIL_0002XR CIL_0002XR_0001 CGP 20:57329759-57379211

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003723 TAS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005635 TAS nuclear envelope
GO:0005640 TAS nuclear outer membrane
GO:0005643 TAS nuclear pore
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 TAS cytoskeleton
GO:0005975 TAS carbohydrate metabolic process
GO:0006406 TAS mRNA export from nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008017 ISS microtubule binding
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0055085 TAS transmembrane transport
GO:0071407 IEA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029013 Rae1-001 protein_coding Mus_musculus 0 1362
ENSMUST00000132212 Rae1-002 protein_coding Mus_musculus 0 726
ENSMUST00000124793 Rae1-003 retained_intron Mus_musculus 0 392
ENSMUST00000123039 Rae1-004 retained_intron Mus_musculus 4e-31 141

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