C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XX, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101203 COL20A1 9606 + 20:63293186-63334851 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358894 COL20A1-006 63293186-63330933 protein_coding
  ENST00000415763 COL20A1-004 63319086-63328498 protein_coding
  ENST00000422202 COL20A1-001 63295040-63334851 protein_coding
  ENST00000455906 COL20A1-009 63320099-63328479 protein_coding
  ENST00000471582 COL20A1-002 63324313-63330933 retained_intron
  ENST00000479501 COL20A1-005 63293224-63330933 retained_intron
  ENST00000494913 COL20A1-007 63327202-63330933 retained_intron
  ENST00000496810 COL20A1-008 63329153-63330933 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryTestisENST00000358894ENST00000415763ENST00000422202ENST00000471582ENST00000479501ENST00000494913ENST00000496810
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Testis
ENST00000358894 N/A N/A 0.617±0.00 N/A N/A N/A N/A N/A 0.049±0.02 N/A
ENST00000415763 N/A N/A 0.535±0.00 N/A N/A N/A N/A N/A 0.145±0.06 N/A
ENST00000422202 0.003±0.00 0.046±0.00 0.026±0.00 0.014±0.00 0.009±0.00 0.003±0.00 0.007±0.00 0.003±0.00 0.012±0.01 N/A
ENST00000471582 N/A N/A 0.213±0.00 N/A N/A N/A N/A 0.009±0.00 N/A 0.288±0.00
ENST00000479501 N/A N/A 0.298±0.23 N/A N/A N/A N/A N/A 0.087±0.00 0.516±0.30
ENST00000494913 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.820±1.83
ENST00000496810 N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A 0.124±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045B CIL_00045B_0001 CGP 20:63272785-63334851
CIL_00010A CIL_00010A_0001 CGP 20:63293186-63378401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0030198 TAS extracellular matrix organization
GO:0031012 TAS extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037517 slc35c2 solute carrier family 35, member C2 protein_coding Danio_rerio
ENSMUSG00000016356 Col20a1 collagen, type XX, alpha 1 protein_coding Mus_musculus

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