C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XX, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016356 Col20a1 10090 + 2:180986535-181017540 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000108856 Col20a1-001 180986535-181017540 protein_coding
  ENSMUST00000149179 Col20a1-002 180986535-181016328 protein_coding
  ENSMUST00000152473 Col20a1-003 181000454-181003458 nonsense_mediated_decay
  ENSMUST00000155425 Col20a1-004 181013240-181017540 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000108856ENSMUST00000155425
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000108856 1.114±0.38 2.067±0.05 0.511±0.24 0.635±0.27 1.645±0.79 0.301±0.15 0.231±0.11 1.270±0.43 2.487±1.24 1.720±1.89 5.804±2.78
ENSMUST00000155425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.472±7.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045B CIL_00045B_0002 CGP 2:180967225-181017540
CIL_00010A CIL_00010A_0002 CGP 2:180986535-181043546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037517 slc35c2 solute carrier family 35, member C2 protein_coding Danio_rerio
ENSG00000101203 COL20A1 collagen, type XX, alpha 1 protein_coding Homo_sapiens

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