C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XX, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422202 COL20A1-001 ENSG00000101203 9606 + 20:63295040-63334851 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryENST00000422202
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary
ENST00000422202 0.003±0.00 0.046±0.00 0.026±0.00 0.014±0.00 0.009±0.00 0.003±0.00 0.007±0.00 0.003±0.00 0.012±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045B CIL_00045B_0001 CGP 20:63272785-63334851
CIL_00010A CIL_00010A_0001 CGP 20:63293186-63378401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0030198 TAS extracellular matrix organization
GO:0031012 TAS extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149179 Col20a1-002 protein_coding Mus_musculus 0 2357
ENSMUST00000108856 Col20a1-001 protein_coding Mus_musculus 0 1982
ENSMUST00000152473 Col20a1-003 nonsense_mediated_decay Mus_musculus 0 198

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