C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00010A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101203-ENSG00000101204 CGP 9606 20:63293186-63378401
GeneTranscriptPositionBiotype
ENSG00000101203 (COL20A1)
collagen, type XX, alpha 1 		ENST00000358894 (COL20A1-006) 63293186-63330933 protein_coding
ENST00000415763 (COL20A1-004) 63319086-63328498 protein_coding
ENST00000422202 (COL20A1-001) 63295040-63334851 protein_coding
ENST00000455906 (COL20A1-009) 63320099-63328479 protein_coding
ENST00000471582 (COL20A1-002) 63324313-63330933 retained_intron
ENST00000479501 (COL20A1-005) 63293224-63330933 retained_intron
ENST00000494913 (COL20A1-007) 63327202-63330933 retained_intron
ENST00000496810 (COL20A1-008) 63329153-63330933 processed_transcript
ENSG00000101204 (CHRNA4)
cholinergic receptor, nicotinic, alpha 4 (neuronal) 		ENST00000370263 (CHRNA4-001) 63344068-63361387 protein_coding
ENST00000463705 (CHRNA4-002) 63344069-63377993 processed_transcript
ENST00000467563 (CHRNA4-004) 63346594-63361304 processed_transcript
ENST00000475033 (CHRNA4-003) 63370753-63378137 processed_transcript
ENST00000480012 (CHRNA4-006) 63374421-63378401 processed_transcript
ENST00000498043 (CHRNA4-007) 63346594-63359699 nonsense_mediated_decay
ENST00000615287 (CHRNA4-201) 63343310-63361396 protein_coding
ENSG00000203900 (RP11-261N11.8)
 ENST00000370257 (RP11-261N11.8-002) 63359988-63371177 antisense
ENST00000428531 (RP11-261N11.8-001) 63368882-63371172 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00010A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016356-ENSMUSG00000027577 CGP 10090 2:180986535-181043546
GeneTranscriptPositionBiotype
ENSMUSG00000016356 (Col20a1)
collagen, type XX, alpha 1 		ENSMUST00000108856 (Col20a1-001) 180986535-181017540 protein_coding
ENSMUST00000149179 (Col20a1-002) 180986535-181016328 protein_coding
ENSMUST00000152473 (Col20a1-003) 181000454-181003458 nonsense_mediated_decay
ENSMUST00000155425 (Col20a1-004) 181013240-181017540 protein_coding
ENSMUSG00000027577 (Chrna4)
cholinergic receptor, nicotinic, alpha polypeptide 4 		ENSMUST00000067120 (Chrna4-001) 181022311-181039305 protein_coding
ENSMUST00000108851 (Chrna4-002) 181018380-181039187 protein_coding
ENSMUST00000124400 (Chrna4-003) 181034024-181043546 protein_coding
ENSMUST00000135766 (Chrna4-004) 181029425-181039225 nonsense_mediated_decay
ENSMUSG00000070461 (9230112E08Rik)
RIKEN cDNA 9230112E08 gene 		ENSMUST00000094214 (9230112E08Rik-201) 180984232-180985591 sense_overlapping
ENSMUST00000189441 (9230112E08Rik-001) 180983924-180987275 sense_overlapping

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010A_0001ENSG00000101203ENST00000358894ENST00000415763ENST00000422202ENST00000455906ENST00000471582ENST00000479501ENST00000494913ENST00000496810ENSG00000101204ENST00000370263ENST00000463705ENST00000467563ENST00000475033ENST00000480012ENST00000498043ENST00000615287ENSG00000203900ENST00000370257ENST00000428531CIL_00010A_0002ENSMUSG00000016356ENSMUST00000108856ENSMUST00000149179ENSMUST00000152473ENSMUST00000155425ENSMUSG00000027577ENSMUST00000067120ENSMUST00000108851ENSMUST00000124400ENSMUST00000135766ENSMUSG00000070461ENSMUST00000094214ENSMUST00000189441
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010A_0001ENSG00000101203ENST00000358894ENST00000415763ENST00000422202ENST00000471582ENST00000479501ENST00000494913ENST00000496810ENSG00000101204ENST00000370263ENST00000467563ENST00000498043ENST00000615287ENSG00000203900ENST00000370257CIL_00010A_0002ENSMUSG00000016356ENSMUST00000108856ENSMUST00000155425ENSMUSG00000027577ENSMUST00000067120ENSMUST00000108851ENSMUST00000135766ENSMUSG00000070461ENSMUST00000094214ENSMUST00000189441
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101203 ENST00000358894 N/A N/A N/A 0.617±0.00 N/A N/A N/A N/A N/A N/A N/A 0.049±0.02 N/A N/A
ENST00000415763 N/A N/A N/A 0.535±0.00 N/A N/A N/A N/A N/A N/A N/A 0.145±0.06 N/A N/A
ENST00000422202 0.003±0.00 0.046±0.00 N/A 0.026±0.00 0.014±0.00 0.009±0.00 0.003±0.00 0.007±0.00 N/A 0.003±0.00 N/A 0.012±0.01 N/A N/A
ENST00000455906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471582 N/A N/A N/A 0.213±0.00 N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.288±0.00
ENST00000479501 N/A N/A N/A 0.298±0.23 N/A N/A N/A N/A N/A N/A N/A 0.087±0.00 N/A 0.516±0.30
ENST00000494913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.820±1.83
ENST00000496810 N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A 0.124±0.00 N/A N/A
ENSG00000101204 ENST00000370263 N/A N/A 0.349±0.00 4.499±0.00 N/A 0.052±0.00 0.038±0.00 0.219±0.10 4.575±0.00 0.081±0.00 N/A 0.024±0.01 0.047±0.00 1.752±0.43
ENST00000463705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467563 N/A 0.017±0.00 0.374±0.00 N/A 0.020±0.00 N/A 0.039±0.00 0.142±0.00 N/A N/A N/A N/A 0.018±0.00 N/A
ENST00000475033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498043 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 0.548±0.00 N/A 0.018±0.00 N/A
ENST00000615287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.02 N/A N/A
ENSG00000203900 ENST00000370257 0.024±0.00 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A 0.023±0.01 N/A N/A N/A N/A
ENST00000428531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016356 ENSMUST00000108856 N/A 1.114±0.38 2.067±0.05 0.511±0.24 0.635±0.27 1.645±0.79 N/A 0.301±0.15 0.231±0.11 1.270±0.43 N/A 2.487±1.24 1.720±1.89 5.804±2.78
ENSMUST00000149179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.472±7.46
ENSMUSG00000027577 ENSMUST00000067120 0.106±0.02 2.281±0.41 0.014±0.00 7.146±2.15 0.033±0.01 0.036±0.02 0.014±0.00 10.623±3.25 0.686±0.61 0.012±0.00 0.025±0.01 0.900±0.61 0.909±0.65 0.198±0.12
ENSMUST00000108851 N/A 1.634±0.42 0.020±0.00 2.231±0.00 0.032±0.04 0.039±0.02 N/A N/A 0.404±0.20 N/A 0.026±0.01 0.693±0.22 N/A 0.174±0.05
ENSMUST00000124400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135766 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A
ENSMUSG00000070461 ENSMUST00000094214 N/A N/A N/A 4.026±0.00 N/A N/A N/A N/A N/A N/A N/A 2.056±0.00 0.780±0.00 N/A
ENSMUST00000189441 1.181±0.36 1.522±0.31 2.418±0.18 1.606±0.01 1.923±0.42 1.999±0.49 N/A 0.691±0.20 0.660±0.14 1.784±0.65 N/A 2.647±0.65 0.948±0.58 N/A

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