C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIO kinase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101782 RIOK3 9606 + 18:23452823-23486603 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339486 RIOK3-001 23452823-23483140 protein_coding
  ENST00000577250 RIOK3-011 23477188-23486603 protein_coding
  ENST00000577501 RIOK3-002 23453308-23481500 protein_coding
  ENST00000581220 RIOK3-005 23479007-23483137 retained_intron
  ENST00000581302 RIOK3-003 23453292-23482528 retained_intron
  ENST00000581339 RIOK3-004 23466169-23481365 retained_intron
  ENST00000581585 RIOK3-008 23453287-23481580 protein_coding
  ENST00000584052 RIOK3-009 23453288-23464294 retained_intron
  ENST00000584130 RIOK3-007 23466135-23477203 nonsense_mediated_decay
  ENST00000584960 RIOK3-006 23453287-23463319 retained_intron
  ENST00000584992 RIOK3-010 23464556-23467577 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339486ENST00000577501ENST00000581220ENST00000581302ENST00000581585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339486 7.514±0.00 4.706±0.00 N/A 3.763±1.52 3.389±2.54 7.239±4.09 4.992±3.57 5.313±2.85 4.453±3.37 6.190±3.23 9.541±7.16 4.741±1.89 8.936±3.35 6.483±0.00
ENST00000577501 N/A N/A 2.475±0.00 2.144±0.64 3.852±0.00 N/A 0.606±0.00 1.752±0.00 2.516±0.00 4.340±0.43 N/A N/A 2.487±0.00 8.261±0.34
ENST00000581220 3.826±0.00 6.325±0.00 N/A 2.261±0.00 4.489±0.00 N/A N/A 6.771±0.00 1.896±0.00 4.474±0.00 N/A 4.108±0.04 2.976±1.03 N/A
ENST00000581302 N/A 2.449±0.00 0.879±0.00 2.315±0.00 1.969±0.70 2.260±0.00 0.941±0.00 N/A 1.293±0.00 N/A N/A 4.376±0.00 2.269±0.39 N/A
ENST00000581585 4.106±0.00 N/A N/A 1.275±0.00 1.845±0.00 4.627±0.00 3.108±1.92 6.056±0.00 2.035±0.00 2.487±0.00 2.500±0.00 3.029±0.00 N/A 4.525±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FI CIL_0002FI_0002 CGP 18:23197144-23486603
CIL_0005WY CIL_0005WY_0001 CGP 18:23452823-23531807

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006468 IEA protein phosphorylation
GO:0007059 TAS chromosome segregation
GO:0008152 IEA metabolic process
GO:0009103 IEA lipopolysaccharide biosynthetic process
GO:0016020 IEA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042751 riok3 RIO kinase 3 (yeast) protein_coding Danio_rerio
ENSMUSG00000024404 Riok3 RIO kinase 3 protein_coding Mus_musculus

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