C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002FI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090685-ENSDARG00000042751 CGP 7955 24:37724086-37750229
GeneTranscriptPositionBiotype
ENSDARG00000042751 (riok3)
RIO kinase 3 (yeast) 		ENSDART00000062745 (riok3-001) 37736629-37750229 protein_coding
ENSDARG00000090685 (TMEM241 (1 of 2))
transmembrane protein 241 		ENSDART00000128962 (TMEM241 (1 of 2)-201) 37734355-37734965 protein_coding
ENSDART00000155725 (TMEM241 (1 of 2)-002) 37728640-37735066 protein_coding
ENSDART00000156808 (TMEM241 (1 of 2)-001) 37724086-37727323 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002FI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134490-ENSG00000101782 CGP 9606 18:23197144-23486603
GeneTranscriptPositionBiotype
ENSG00000101782 (RIOK3)
RIO kinase 3 		ENST00000339486 (RIOK3-001) 23452823-23483140 protein_coding
ENST00000577250 (RIOK3-011) 23477188-23486603 protein_coding
ENST00000577501 (RIOK3-002) 23453308-23481500 protein_coding
ENST00000581220 (RIOK3-005) 23479007-23483137 retained_intron
ENST00000581302 (RIOK3-003) 23453292-23482528 retained_intron
ENST00000581339 (RIOK3-004) 23466169-23481365 retained_intron
ENST00000581585 (RIOK3-008) 23453287-23481580 protein_coding
ENST00000584052 (RIOK3-009) 23453288-23464294 retained_intron
ENST00000584130 (RIOK3-007) 23466135-23477203 nonsense_mediated_decay
ENST00000584960 (RIOK3-006) 23453287-23463319 retained_intron
ENST00000584992 (RIOK3-010) 23464556-23467577 retained_intron
ENSG00000134490 (TMEM241)
transmembrane protein 241 		ENST00000383233 (TMEM241-001) 23296017-23437905 protein_coding
ENST00000460322 (TMEM241-005) 23297894-23437946 nonsense_mediated_decay
ENST00000473688 (TMEM241-002) 23296017-23437961 nonsense_mediated_decay
ENST00000475185 (TMEM241-003) 23296013-23331259 processed_transcript
ENST00000477053 (TMEM241-007) 23296017-23437959 nonsense_mediated_decay
ENST00000482411 (TMEM241-006) 23352285-23437939 nonsense_mediated_decay
ENST00000497608 (TMEM241-004) 23356594-23437932 nonsense_mediated_decay
ENST00000542162 (TMEM241-201) 23298008-23437869 protein_coding
ENST00000577448 (TMEM241-009) 23297875-23331574 processed_transcript
ENST00000577531 (TMEM241-013) 23356630-23437853 nonsense_mediated_decay
ENST00000578520 (TMEM241-011) 23352255-23437955 protein_coding
ENST00000578790 (TMEM241-015) 23204387-23331215 processed_transcript
ENST00000580025 (TMEM241-008) 23371448-23437932 nonsense_mediated_decay
ENST00000581444 (TMEM241-014) 23197755-23437932 nonsense_mediated_decay
ENST00000582336 (TMEM241-012) 23365635-23437913 protein_coding
ENST00000583048 (TMEM241-010) 23297748-23370281 retained_intron
ENST00000584625 (TMEM241-016) 23197144-23227008 processed_transcript
ENSG00000134508 (CABLES1)
Cdk5 and Abl enzyme substrate 1 		ENST00000256925 (CABLES1-001) 23135763-23260467 protein_coding
ENST00000400473 (CABLES1-003) 23134564-23257747 protein_coding
ENST00000420687 (CABLES1-002) 23155825-23258653 protein_coding
ENST00000578052 (CABLES1-006) 23136549-23189357 retained_intron
ENST00000579963 (CABLES1-010) 23134564-23258654 nonsense_mediated_decay
ENST00000580153 (CABLES1-004) 23135452-23194540 protein_coding
ENST00000580644 (CABLES1-009) 23136493-23190530 processed_transcript
ENST00000582882 (CABLES1-008) 23136424-23214231 protein_coding
ENST00000583220 (CABLES1-007) 23136459-23197053 processed_transcript
ENST00000585061 (CABLES1-005) 23149709-23258139 processed_transcript
ENSG00000199357 (Y_RNA)
Y RNA 		ENST00000362487 (Y_RNA.1-221) 23456371-23456467 misc_RNA
ENSG00000266495 (RP11-17J14.2)
 ENST00000585184 (RP11-17J14.2-001) 23257164-23260354 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002FI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049411-ENSMUSG00000024404 CGP 10090 18:11981303-12157367
GeneTranscriptPositionBiotype
ENSMUSG00000024404 (Riok3)
RIO kinase 3 		ENSMUST00000025270 (Riok3-201) 12128850-12157367 protein_coding
ENSMUSG00000049411 (Tmem241)
transmembrane protein 241 		ENSMUST00000050228 (Tmem241-201) 11981303-12121480 protein_coding
ENSMUST00000055447 (Tmem241-202) 11981303-12121480 protein_coding
ENSMUST00000092075 (Tmem241-203) 12066671-12121480 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FI_0001ENSDARG00000042751ENSDART00000062745ENSDARG00000090685ENSDART00000128962ENSDART00000155725ENSDART00000156808CIL_0002FI_0002ENSG00000101782ENST00000339486ENST00000577250ENST00000577501ENST00000581220ENST00000581302ENST00000581339ENST00000581585ENST00000584052ENST00000584130ENST00000584960ENST00000584992ENSG00000134490ENST00000383233ENST00000460322ENST00000473688ENST00000475185ENST00000477053ENST00000482411ENST00000497608ENST00000542162ENST00000577448ENST00000577531ENST00000578520ENST00000578790ENST00000580025ENST00000581444ENST00000582336ENST00000583048ENST00000584625ENSG00000134508ENST00000256925ENST00000400473ENST00000420687ENST00000578052ENST00000579963ENST00000580153ENST00000580644ENST00000582882ENST00000583220ENST00000585061ENSG00000199357ENST00000362487ENSG00000266495ENST00000585184CIL_0002FI_0003ENSMUSG00000024404ENSMUST00000025270ENSMUSG00000049411ENSMUST00000050228ENSMUST00000055447ENSMUST00000092075
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FI_0001ENSDARG00000042751ENSDART00000062745ENSDARG00000090685ENSDART00000128962ENSDART00000155725ENSDART00000156808CIL_0002FI_0002ENSG00000101782ENST00000339486ENST00000577501ENST00000581220ENST00000581302ENST00000581585ENSG00000134490ENST00000383233ENST00000473688ENST00000475185ENST00000482411ENST00000542162ENST00000577448ENST00000577531ENST00000578790ENST00000581444ENST00000583048ENST00000584625ENSG00000134508ENST00000256925ENST00000400473ENST00000420687ENST00000579963ENST00000582882ENST00000583220ENSG00000199357ENST00000362487ENSG00000266495ENST00000585184CIL_0002FI_0003ENSMUSG00000024404ENSMUST00000025270ENSMUSG00000049411ENSMUST00000050228ENSMUST00000055447ENSMUST00000092075
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042751 ENSDART00000062745 N/A N/A N/A 8.355±4.44 N/A N/A 17.353±11.95 16.351±0.94 5.181±0.00 N/A 14.727±0.00 N/A N/A N/A
ENSDARG00000090685 ENSDART00000128962 N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155725 N/A N/A N/A 0.619±0.30 N/A N/A 0.349±0.21 0.306±0.00 0.122±0.00 N/A 0.165±0.00 N/A N/A N/A
ENSDART00000156808 N/A N/A N/A 2.360±0.27 N/A N/A 2.608±0.70 0.954±0.10 N/A N/A 0.287±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101782 ENST00000339486 7.514±0.00 4.706±0.00 N/A 3.763±1.52 3.389±2.54 7.239±4.09 4.992±3.57 5.313±2.85 4.453±3.37 6.190±3.23 9.541±7.16 4.741±1.89 8.936±3.35 6.483±0.00
ENST00000577250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577501 N/A N/A 2.475±0.00 2.144±0.64 3.852±0.00 N/A 0.606±0.00 1.752±0.00 2.516±0.00 4.340±0.43 N/A N/A 2.487±0.00 8.261±0.34
ENST00000581220 3.826±0.00 6.325±0.00 N/A 2.261±0.00 4.489±0.00 N/A N/A 6.771±0.00 1.896±0.00 4.474±0.00 N/A 4.108±0.04 2.976±1.03 N/A
ENST00000581302 N/A 2.449±0.00 0.879±0.00 2.315±0.00 1.969±0.70 2.260±0.00 0.941±0.00 N/A 1.293±0.00 N/A N/A 4.376±0.00 2.269±0.39 N/A
ENST00000581339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581585 4.106±0.00 N/A N/A 1.275±0.00 1.845±0.00 4.627±0.00 3.108±1.92 6.056±0.00 2.035±0.00 2.487±0.00 2.500±0.00 3.029±0.00 N/A 4.525±0.01
ENST00000584052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134490 ENST00000383233 N/A 0.567±0.00 N/A 0.500±0.00 0.982±0.00 N/A 0.440±0.00 0.432±0.00 0.256±0.00 0.686±0.42 N/A 0.601±0.05 0.739±0.20 0.282±0.00
ENST00000460322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473688 1.041±0.00 N/A N/A 0.951±0.00 0.601±0.00 1.150±0.00 0.046±0.00 0.386±0.00 0.217±0.00 0.109±0.00 N/A 0.507±0.00 0.230±0.00 N/A
ENST00000475185 N/A 1.088±0.00 N/A 0.862±0.00 0.511±0.40 N/A 0.149±0.00 N/A 0.261±0.00 0.714±0.00 N/A 1.096±0.85 0.959±0.00 N/A
ENST00000477053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482411 N/A N/A N/A 3.379±0.00 N/A N/A 0.090±0.00 N/A N/A N/A N/A 1.792±0.00 N/A N/A
ENST00000497608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542162 N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577448 N/A N/A N/A N/A N/A N/A N/A N/A 2.329±0.00 N/A N/A 6.551±0.00 2.793±0.00 N/A
ENST00000577531 N/A N/A N/A N/A N/A N/A N/A N/A 3.138±0.00 N/A 1.711±1.29 N/A N/A N/A
ENST00000578520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578790 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.539±0.00 N/A N/A N/A N/A
ENST00000580025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581444 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A
ENST00000582336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583048 N/A N/A N/A 4.171±0.00 0.481±0.00 N/A N/A N/A N/A N/A N/A 3.455±0.00 3.804±0.00 3.760±0.00
ENST00000584625 N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A 0.855±0.00 0.904±0.00 N/A N/A N/A N/A
ENSG00000134508 ENST00000256925 4.141±0.00 1.190±0.00 N/A 13.583±0.00 8.677±0.00 N/A 0.196±0.00 2.736±1.78 N/A 1.744±0.53 0.150±0.00 2.196±0.49 1.376±0.52 1.261±0.90
ENST00000400473 N/A N/A N/A N/A 1.849±0.00 N/A 0.257±0.17 N/A 1.092±0.00 0.858±0.00 N/A 3.272±2.03 3.683±0.00 1.223±0.00
ENST00000420687 5.434±0.00 1.024±0.00 2.045±0.00 3.072±0.00 3.807±0.00 0.913±0.39 N/A 1.190±0.00 3.362±0.00 1.817±0.87 0.082±0.00 2.075±0.53 1.107±0.23 1.642±0.75
ENST00000578052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579963 N/A N/A N/A N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A N/A N/A
ENST00000580153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A
ENST00000583220 N/A N/A N/A N/A N/A 2.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199357 ENST00000362487 0.393±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266495 ENST00000585184 N/A N/A N/A N/A N/A 4.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024404 ENSMUST00000025270 14.404±1.59 34.692±12.20 19.283±3.45 13.723±3.03 12.199±3.49 11.687±3.56 10.171±1.05 12.733±0.39 15.759±6.83 16.356±1.20 23.932±5.11 12.100±2.75 20.810±4.54 16.649±4.82
ENSMUSG00000049411 ENSMUST00000050228 0.754±0.25 0.464±0.00 0.451±0.00 0.219±0.12 0.929±0.06 0.816±0.59 0.270±0.00 0.744±0.27 0.402±0.07 0.508±0.11 0.327±0.11 0.568±0.23 0.343±0.10 0.152±0.06
ENSMUST00000055447 2.013±0.02 1.751±0.77 0.837±0.00 0.842±0.03 1.383±0.97 1.059±0.40 0.622±0.28 1.033±0.81 0.807±0.52 1.712±0.97 0.278±0.17 2.324±0.87 0.745±0.38 0.303±0.04
ENSMUST00000092075 N/A 3.814±0.00 N/A 0.399±0.00 N/A N/A N/A N/A 1.203±0.00 N/A 0.593±0.00 N/A 2.200±0.67 0.226±0.00

Loading