C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002FI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000090685-ENSDARG00000042751 CGP 7955 24:37724086-37750229
GeneTranscriptPositionBiotype
ENSDARG00000042751 (riok3)
RIO kinase 3 (yeast) 		ENSDART00000062745 (riok3-001) 37736629-37750229 protein_coding
ENSDARG00000090685 (TMEM241 (1 of 2))
transmembrane protein 241 		ENSDART00000128962 (TMEM241 (1 of 2)-201) 37734355-37734965 protein_coding
ENSDART00000155725 (TMEM241 (1 of 2)-002) 37728640-37735066 protein_coding
ENSDART00000156808 (TMEM241 (1 of 2)-001) 37724086-37727323 protein_coding
CIL_0002FI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000134490-ENSG00000101782 CGP 9606 18:23197144-23486603
GeneTranscriptPositionBiotype
ENSG00000101782 (RIOK3)
RIO kinase 3 		ENST00000339486 (RIOK3-001) 23452823-23483140 protein_coding
ENST00000577250 (RIOK3-011) 23477188-23486603 protein_coding
ENST00000577501 (RIOK3-002) 23453308-23481500 protein_coding
ENST00000581220 (RIOK3-005) 23479007-23483137 retained_intron
ENST00000581302 (RIOK3-003) 23453292-23482528 retained_intron
ENST00000581339 (RIOK3-004) 23466169-23481365 retained_intron
ENST00000581585 (RIOK3-008) 23453287-23481580 protein_coding
ENST00000584052 (RIOK3-009) 23453288-23464294 retained_intron
ENST00000584130 (RIOK3-007) 23466135-23477203 nonsense_mediated_decay
ENST00000584960 (RIOK3-006) 23453287-23463319 retained_intron
ENST00000584992 (RIOK3-010) 23464556-23467577 retained_intron
ENSG00000134490 (TMEM241)
transmembrane protein 241 		ENST00000383233 (TMEM241-001) 23296017-23437905 protein_coding
ENST00000460322 (TMEM241-005) 23297894-23437946 nonsense_mediated_decay
ENST00000473688 (TMEM241-002) 23296017-23437961 nonsense_mediated_decay
ENST00000475185 (TMEM241-003) 23296013-23331259 processed_transcript
ENST00000477053 (TMEM241-007) 23296017-23437959 nonsense_mediated_decay
ENST00000482411 (TMEM241-006) 23352285-23437939 nonsense_mediated_decay
ENST00000497608 (TMEM241-004) 23356594-23437932 nonsense_mediated_decay
ENST00000542162 (TMEM241-201) 23298008-23437869 protein_coding
ENST00000577448 (TMEM241-009) 23297875-23331574 processed_transcript
ENST00000577531 (TMEM241-013) 23356630-23437853 nonsense_mediated_decay
ENST00000578520 (TMEM241-011) 23352255-23437955 protein_coding
ENST00000578790 (TMEM241-015) 23204387-23331215 processed_transcript
ENST00000580025 (TMEM241-008) 23371448-23437932 nonsense_mediated_decay
ENST00000581444 (TMEM241-014) 23197755-23437932 nonsense_mediated_decay
ENST00000582336 (TMEM241-012) 23365635-23437913 protein_coding
ENST00000583048 (TMEM241-010) 23297748-23370281 retained_intron
ENST00000584625 (TMEM241-016) 23197144-23227008 processed_transcript
ENSG00000134508 (CABLES1)
Cdk5 and Abl enzyme substrate 1 		ENST00000256925 (CABLES1-001) 23135763-23260467 protein_coding
ENST00000400473 (CABLES1-003) 23134564-23257747 protein_coding
ENST00000420687 (CABLES1-002) 23155825-23258653 protein_coding
ENST00000578052 (CABLES1-006) 23136549-23189357 retained_intron
ENST00000579963 (CABLES1-010) 23134564-23258654 nonsense_mediated_decay
ENST00000580153 (CABLES1-004) 23135452-23194540 protein_coding
ENST00000580644 (CABLES1-009) 23136493-23190530 processed_transcript
ENST00000582882 (CABLES1-008) 23136424-23214231 protein_coding
ENST00000583220 (CABLES1-007) 23136459-23197053 processed_transcript
ENST00000585061 (CABLES1-005) 23149709-23258139 processed_transcript
ENSG00000199357 (Y_RNA)
Y RNA 		ENST00000362487 (Y_RNA.1-221) 23456371-23456467 misc_RNA
ENSG00000266495 (RP11-17J14.2)
 ENST00000585184 (RP11-17J14.2-001) 23257164-23260354 antisense
CIL_0002FI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049411-ENSMUSG00000024404 CGP 10090 18:11981303-12157367
GeneTranscriptPositionBiotype
ENSMUSG00000024404 (Riok3)
RIO kinase 3 		ENSMUST00000025270 (Riok3-201) 12128850-12157367 protein_coding
ENSMUSG00000049411 (Tmem241)
transmembrane protein 241 		ENSMUST00000050228 (Tmem241-201) 11981303-12121480 protein_coding
ENSMUST00000055447 (Tmem241-202) 11981303-12121480 protein_coding
ENSMUST00000092075 (Tmem241-203) 12066671-12121480 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FI_0001ENSDARG00000042751ENSDART00000062745ENSDARG00000090685ENSDART00000128962ENSDART00000155725ENSDART00000156808CIL_0002FI_0002ENSG00000101782ENST00000339486ENST00000577250ENST00000577501ENST00000581220ENST00000581302ENST00000581339ENST00000581585ENST00000584052ENST00000584130ENST00000584960ENST00000584992ENSG00000134490ENST00000383233ENST00000460322ENST00000473688ENST00000475185ENST00000477053ENST00000482411ENST00000497608ENST00000542162ENST00000577448ENST00000577531ENST00000578520ENST00000578790ENST00000580025ENST00000581444ENST00000582336ENST00000583048ENST00000584625ENSG00000134508ENST00000256925ENST00000400473ENST00000420687ENST00000578052ENST00000579963ENST00000580153ENST00000580644ENST00000582882ENST00000583220ENST00000585061ENSG00000199357ENST00000362487ENSG00000266495ENST00000585184CIL_0002FI_0003ENSMUSG00000024404ENSMUST00000025270ENSMUSG00000049411ENSMUST00000050228ENSMUST00000055447ENSMUST00000092075
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002FI_0001ENSDARG00000042751ENSDART00000062745ENSDARG00000090685ENSDART00000128962ENSDART00000155725ENSDART00000156808CIL_0002FI_0002ENSG00000101782ENST00000339486ENST00000577501ENST00000581220ENST00000581302ENST00000581585ENSG00000134490ENST00000383233ENST00000473688ENST00000475185ENST00000482411ENST00000542162ENST00000577448ENST00000577531ENST00000578790ENST00000581444ENST00000583048ENST00000584625ENSG00000134508ENST00000256925ENST00000400473ENST00000420687ENST00000579963ENST00000582882ENST00000583220ENSG00000199357ENST00000362487ENSG00000266495ENST00000585184CIL_0002FI_0003ENSMUSG00000024404ENSMUST00000025270ENSMUSG00000049411ENSMUST00000050228ENSMUST00000055447ENSMUST00000092075
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042751 ENSDART00000062745 N/A N/A N/A 8.355±4.44 N/A N/A 17.353±11.95 16.351±0.94 5.181±0.00 N/A 14.727±0.00 N/A N/A N/A
ENSDARG00000090685 ENSDART00000128962 N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155725 N/A N/A N/A 0.619±0.30 N/A N/A 0.349±0.21 0.306±0.00 0.122±0.00 N/A 0.165±0.00 N/A N/A N/A
ENSDART00000156808 N/A N/A N/A 2.360±0.27 N/A N/A 2.608±0.70 0.954±0.10 N/A N/A 0.287±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101782 ENST00000339486 7.514±0.00 4.706±0.00 N/A 3.763±1.52 3.389±2.54 7.239±4.09 4.992±3.57 5.313±2.85 4.453±3.37 6.190±3.23 9.541±7.16 4.741±1.89 8.936±3.35 6.483±0.00
ENST00000577250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577501 N/A N/A 2.475±0.00 2.144±0.64 3.852±0.00 N/A 0.606±0.00 1.752±0.00 2.516±0.00 4.340±0.43 N/A N/A 2.487±0.00 8.261±0.34
ENST00000581220 3.826±0.00 6.325±0.00 N/A 2.261±0.00 4.489±0.00 N/A N/A 6.771±0.00 1.896±0.00 4.474±0.00 N/A 4.108±0.04 2.976±1.03 N/A
ENST00000581302 N/A 2.449±0.00 0.879±0.00 2.315±0.00 1.969±0.70 2.260±0.00 0.941±0.00 N/A 1.293±0.00 N/A N/A 4.376±0.00 2.269±0.39 N/A
ENST00000581339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581585 4.106±0.00 N/A N/A 1.275±0.00 1.845±0.00 4.627±0.00 3.108±1.92 6.056±0.00 2.035±0.00 2.487±0.00 2.500±0.00 3.029±0.00 N/A 4.525±0.01
ENST00000584052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134490 ENST00000383233 N/A 0.567±0.00 N/A 0.500±0.00 0.982±0.00 N/A 0.440±0.00 0.432±0.00 0.256±0.00 0.686±0.42 N/A 0.601±0.05 0.739±0.20 0.282±0.00
ENST00000460322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473688 1.041±0.00 N/A N/A 0.951±0.00 0.601±0.00 1.150±0.00 0.046±0.00 0.386±0.00 0.217±0.00 0.109±0.00 N/A 0.507±0.00 0.230±0.00 N/A
ENST00000475185 N/A 1.088±0.00 N/A 0.862±0.00 0.511±0.40 N/A 0.149±0.00 N/A 0.261±0.00 0.714±0.00 N/A 1.096±0.85 0.959±0.00 N/A
ENST00000477053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482411 N/A N/A N/A 3.379±0.00 N/A N/A 0.090±0.00 N/A N/A N/A N/A 1.792±0.00 N/A N/A
ENST00000497608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542162 N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577448 N/A N/A N/A N/A N/A N/A N/A N/A 2.329±0.00 N/A N/A 6.551±0.00 2.793±0.00 N/A
ENST00000577531 N/A N/A N/A N/A N/A N/A N/A N/A 3.138±0.00 N/A 1.711±1.29 N/A N/A N/A
ENST00000578520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578790 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.539±0.00 N/A N/A N/A N/A
ENST00000580025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581444 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A
ENST00000582336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583048 N/A N/A N/A 4.171±0.00 0.481±0.00 N/A N/A N/A N/A N/A N/A 3.455±0.00 3.804±0.00 3.760±0.00
ENST00000584625 N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A 0.855±0.00 0.904±0.00 N/A N/A N/A N/A
ENSG00000134508 ENST00000256925 4.141±0.00 1.190±0.00 N/A 13.583±0.00 8.677±0.00 N/A 0.196±0.00 2.736±1.78 N/A 1.744±0.53 0.150±0.00 2.196±0.49 1.376±0.52 1.261±0.90
ENST00000400473 N/A N/A N/A N/A 1.849±0.00 N/A 0.257±0.17 N/A 1.092±0.00 0.858±0.00 N/A 3.272±2.03 3.683±0.00 1.223±0.00
ENST00000420687 5.434±0.00 1.024±0.00 2.045±0.00 3.072±0.00 3.807±0.00 0.913±0.39 N/A 1.190±0.00 3.362±0.00 1.817±0.87 0.082±0.00 2.075±0.53 1.107±0.23 1.642±0.75
ENST00000578052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579963 N/A N/A N/A N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A N/A N/A
ENST00000580153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A
ENST00000583220 N/A N/A N/A N/A N/A 2.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199357 ENST00000362487 0.393±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266495 ENST00000585184 N/A N/A N/A N/A N/A 4.181±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024404 ENSMUST00000025270 14.404±1.59 34.692±12.20 19.283±3.45 13.723±3.03 12.199±3.49 11.687±3.56 10.171±1.05 12.733±0.39 15.759±6.83 16.356±1.20 23.932±5.11 12.100±2.75 20.810±4.54 16.649±4.82
ENSMUSG00000049411 ENSMUST00000050228 0.754±0.25 0.464±0.00 0.451±0.00 0.219±0.12 0.929±0.06 0.816±0.59 0.270±0.00 0.744±0.27 0.402±0.07 0.508±0.11 0.327±0.11 0.568±0.23 0.343±0.10 0.152±0.06
ENSMUST00000055447 2.013±0.02 1.751±0.77 0.837±0.00 0.842±0.03 1.383±0.97 1.059±0.40 0.622±0.28 1.033±0.81 0.807±0.52 1.712±0.97 0.278±0.17 2.324±0.87 0.745±0.38 0.303±0.04
ENSMUST00000092075 N/A 3.814±0.00 N/A 0.399±0.00 N/A N/A N/A N/A 1.203±0.00 N/A 0.593±0.00 N/A 2.200±0.67 0.226±0.00

Loading