C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103365 GGA2 9606 - 16:23463542-23521995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309859 GGA2-001 23463542-23510494 protein_coding
  ENST00000562117 GGA2-009 23493431-23510389 protein_coding
  ENST00000562944 GGA2-006 23493423-23510448 protein_coding
  ENST00000563047 GGA2-018 23493360-23510424 nonsense_mediated_decay
  ENST00000563494 GGA2-010 23491685-23510492 nonsense_mediated_decay
  ENST00000566547 GGA2-004 23495343-23510487 retained_intron
  ENST00000566651 GGA2-005 23494112-23495778 retained_intron
  ENST00000566685 GGA2-016 23466685-23467413 processed_transcript
  ENST00000567201 GGA2-017 23486085-23494402 retained_intron
  ENST00000567339 GGA2-015 23466590-23467535 processed_transcript
  ENST00000567468 GGA2-002 23464323-23510424 protein_coding
  ENST00000568799 GGA2-007 23491676-23510494 retained_intron
  ENST00000568922 GGA2-014 23466591-23469582 retained_intron
  ENST00000569182 GGA2-013 23474953-23480423 processed_transcript
  ENST00000569189 GGA2-008 23491777-23510488 nonsense_mediated_decay
  ENST00000569300 GGA2-012 23491745-23521995 protein_coding
  ENST00000570111 GGA2-011 23488680-23510464 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309859ENST00000567201ENST00000568799ENST00000568922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309859 3.283±0.00 13.067±0.00 N/A 3.001±1.75 4.928±2.57 3.958±1.91 3.323±2.58 6.311±5.08 2.031±1.50 7.017±0.00 5.359±5.18 7.689±4.34 8.653±2.08 7.059±2.16
ENST00000567201 N/A N/A 9.224±0.00 N/A N/A 5.800±0.00 2.182±0.00 4.883±0.00 5.250±0.00 10.929±0.00 1.165±0.00 N/A N/A N/A
ENST00000568799 N/A N/A N/A 2.036±0.00 6.709±0.00 3.088±0.00 N/A N/A N/A 3.588±0.00 N/A 2.589±0.00 N/A N/A
ENST00000568922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.607±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D5 CIL_0006D5_0001 CGP 16:23388493-23521995
CIL_0006D4 CIL_0006D4_0001 CGP 16:23463542-23557731

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006886 IEA:NAS intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030136 IDA clathrin-coated vesicle
GO:0030306 IDA ADP-ribosylation factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030872 Gga2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein_coding Mus_musculus

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