C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: golgi associated, gamma adaptin ear containing, ARF binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030872 Gga2 10090 - 7:121986722-122021222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033160 Gga2-001 121986722-122021222 protein_coding
  ENSMUST00000124566 Gga2-003 121986722-122021167 nonsense_mediated_decay
  ENSMUST00000131081 Gga2-006 122010423-122021187 retained_intron
  ENSMUST00000138441 Gga2-005 121996596-121999049 retained_intron
  ENSMUST00000144779 Gga2-004 121988765-122002491 retained_intron
  ENSMUST00000145277 Gga2-002 122004747-122021180 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033160ENSMUST00000124566ENSMUST00000131081ENSMUST00000144779
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033160 N/A 1.062±0.00 3.050±0.25 3.250±1.30 N/A 0.829±0.13 N/A N/A 1.526±0.78 0.826±0.00 0.928±0.34 2.117±0.81 N/A 0.402±0.12
ENSMUST00000124566 3.120±0.63 0.948±0.00 7.009±0.30 2.476±1.53 2.773±0.39 0.852±0.18 1.928±0.06 3.214±0.77 2.846±2.25 1.853±0.38 1.140±0.42 4.353±0.50 16.878±7.39 0.687±0.21
ENSMUST00000131081 15.419±0.00 16.642±4.23 N/A N/A 29.113±2.40 5.546±1.59 N/A 11.507±0.00 3.501±0.27 10.326±1.42 N/A 41.843±9.93 N/A N/A
ENSMUST00000144779 19.372±7.20 7.399±0.88 18.359±0.87 13.935±8.89 19.809±5.46 4.478±0.53 6.540±1.40 12.777±3.53 9.043±5.98 7.568±2.48 3.709±0.71 17.949±6.40 45.812±31.45 2.467±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D5 CIL_0006D5_0002 CGP 7:121922839-122021222
CIL_0006D4 CIL_0006D4_0002 CGP 7:121986722-122067263

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030136 IEA clathrin-coated vesicle
GO:0030306 IEA ADP-ribosylation factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000103365 GGA2 golgi-associated, gamma adaptin ear containing, ARF binding protein 2 protein_coding Homo_sapiens

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