C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309859 GGA2-001 ENSG00000103365 9606 - 16:23463542-23510494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309859
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309859 3.283±0.00 13.067±0.00 3.001±1.75 4.928±2.57 3.958±1.91 3.323±2.58 6.311±5.08 2.031±1.50 7.017±0.00 5.359±5.18 7.689±4.34 8.653±2.08 7.059±2.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D5 CIL_0006D5_0001 CGP 16:23388493-23521995
CIL_0006D4 CIL_0006D4_0001 CGP 16:23463542-23557731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005768 IEA endosome
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006886 IEA:NAS intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0030136 IDA clathrin-coated vesicle
GO:0030306 IDA ADP-ribosylation factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124566 Gga2-003 nonsense_mediated_decay Mus_musculus 0 1079
ENSMUST00000033160 Gga2-001 protein_coding Mus_musculus 0 1079
ENSMUST00000144779 Gga2-004 retained_intron Mus_musculus 0 1020
ENSMUST00000145277 Gga2-002 retained_intron Mus_musculus 0 564
ENSMUST00000131081 Gga2-006 retained_intron Mus_musculus 0 278
ENSMUST00000138441 Gga2-005 retained_intron Mus_musculus 0.0000000003 73

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