Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	vacuolar protein sorting 18 homolog (S. cerevisiae)
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000104142	VPS18	9606	+	15:40894430-40903975	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000220509		VPS18-001	40894430-40903975	protein_coding
	ENST00000558474		VPS18-004	40894467-40902861	protein_coding
	ENST00000558855		VPS18-003	40894452-40899397	nonsense_mediated_decay

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000220509	4.941±0.00	6.428±0.00	1.303±0.00	4.851±1.18	4.701±2.85	2.128±0.83	3.149±1.72	4.715±3.47	2.192±0.29	3.385±1.40	3.294±2.11	6.822±4.70	6.690±1.79	4.619±1.01
ENST00000558855	N/A	N/A	N/A	N/A	N/A	N/A	N/A	0.527±0.00	1.088±0.00	N/A	0.625±0.00	1.311±0.00	N/A	N/A

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_000796	CIL_000796_0001	CGP	15:40872214-40903975
CIL_000799	CIL_000799_0001	CGP	15:40894430-40939072

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003779	IEA	actin binding
GO:0005488	IEA	binding
GO:0005515	IPI	protein binding
GO:0005765	IDA	lysosomal membrane
GO:0005769	IEA	early endosome
GO:0005884	IEA	actin filament
GO:0006886	IEA	intracellular protein transport
GO:0007032	IDA	endosome organization
GO:0007040	IDA	lysosome organization
GO:0016192	IEA	vesicle-mediated transport
GO:0030897	IDA	HOPS complex
GO:0046718	IEA	viral entry into host cell
GO:0046872	IEA	metal ion binding

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000070433	vps18	vacuolar protein sorting protein 18	protein_coding	Danio_rerio
ENSMUSG00000034216	Vps18	vacuolar protein sorting 18 (yeast)	protein_coding	Mus_musculus

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