C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vacuolar protein sorting 18 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558855 VPS18-003 ENSG00000104142 9606 + 15:40894452-40899397 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverMuscleOvaryENST00000558855
Transcript ID Kidney Liver Muscle Ovary
ENST00000558855 0.527±0.00 1.088±0.00 0.625±0.00 1.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000796 CIL_000796_0001 CGP 15:40872214-40903975
CIL_000799 CIL_000799_0001 CGP 15:40894430-40939072

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037280 Vps18-001 protein_coding Mus_musculus 0 296
ENSMUST00000139367 Vps18-002 retained_intron Mus_musculus 0 296
ENSMUST00000151500 Vps18-003 processed_transcript Mus_musculus 2e-40 171

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