C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 18 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034216 Vps18 10090 + 2:119288740-119298453 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037280 Vps18-001 119288742-119298453 protein_coding
  ENSMUST00000139367 Vps18-002 119288740-119295487 retained_intron
  ENSMUST00000151500 Vps18-003 119288787-119298326 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037280ENSMUST00000151500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037280 6.801±2.93 12.991±0.35 4.492±1.73 9.379±0.24 10.587±3.60 11.143±1.02 2.892±1.71 9.426±3.03 3.860±1.49 8.285±3.26 2.078±0.44 12.558±3.83 3.907±1.71 3.302±1.15
ENSMUST00000151500 N/A N/A 1.816±0.26 14.434±0.00 N/A N/A 2.326±0.00 N/A 0.442±0.03 N/A 1.536±0.45 4.786±3.18 4.665±2.09 1.609±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000796 CIL_000796_0002 CGP 2:119269201-119298453
CIL_000799 CIL_000799_0002 CGP 2:119288740-119335962

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005884 IDA actin filament
GO:0006886 IEA intracellular protein transport
GO:0007032 IDA endosome organization
GO:0007040 IEA lysosome organization
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IEA HOPS complex
GO:0046718 IMP viral entry into host cell
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070433 vps18 vacuolar protein sorting protein 18 protein_coding Danio_rerio
ENSG00000104142 VPS18 vacuolar protein sorting 18 homolog (S. cerevisiae) protein_coding Homo_sapiens

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