C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000799_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104142-ENSG00000128917 CGP 9606 15:40894430-40939072
GeneTranscriptPositionBiotype
ENSG00000104142 (VPS18)
vacuolar protein sorting 18 homolog (S. cerevisiae) 		ENST00000220509 (VPS18-001) 40894430-40903975 protein_coding
ENST00000558474 (VPS18-004) 40894467-40902861 protein_coding
ENST00000558855 (VPS18-003) 40894452-40899397 nonsense_mediated_decay
ENSG00000128917 (DLL4)
delta-like 4 (Drosophila) 		ENST00000249749 (DLL4-001) 40929393-40939072 protein_coding
ENST00000557876 (DLL4-002) 40929340-40930890 retained_intron
ENST00000559440 (DLL4-003) 40930880-40934921 retained_intron
ENSG00000251161 (RP11-540O11.1)
 ENST00000503052 (RP11-540O11.1-001) 40906811-40910337 lincRNA
CIL_000799_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034216-ENSMUSG00000027314 CGP 10090 2:119288740-119335962
GeneTranscriptPositionBiotype
ENSMUSG00000027314 (Dll4)
delta-like 4 (Drosophila) 		ENSMUST00000102517 (Dll4-001) 119325784-119335962 protein_coding
ENSMUST00000127102 (Dll4-002) 119328538-119332153 processed_transcript
ENSMUSG00000034216 (Vps18)
vacuolar protein sorting 18 (yeast) 		ENSMUST00000037280 (Vps18-001) 119288742-119298453 protein_coding
ENSMUST00000139367 (Vps18-002) 119288740-119295487 retained_intron
ENSMUST00000151500 (Vps18-003) 119288787-119298326 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000799_0001ENSG00000104142ENST00000220509ENST00000558474ENST00000558855ENSG00000128917ENST00000249749ENST00000557876ENST00000559440ENSG00000251161ENST00000503052CIL_000799_0002ENSMUSG00000027314ENSMUST00000102517ENSMUST00000127102ENSMUSG00000034216ENSMUST00000037280ENSMUST00000139367ENSMUST00000151500
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000799_0001ENSG00000104142ENST00000220509ENST00000558855ENSG00000128917ENST00000249749ENSG00000251161ENST00000503052CIL_000799_0002ENSMUSG00000027314ENSMUST00000102517ENSMUST00000127102ENSMUSG00000034216ENSMUST00000037280ENSMUST00000151500
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104142 ENST00000220509 4.941±0.00 6.428±0.00 1.303±0.00 4.851±1.18 4.701±2.85 2.128±0.83 3.149±1.72 4.715±3.47 2.192±0.29 3.385±1.40 3.294±2.11 6.822±4.70 6.690±1.79 4.619±1.01
ENST00000558474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558855 N/A N/A N/A N/A N/A N/A N/A 0.527±0.00 1.088±0.00 N/A 0.625±0.00 1.311±0.00 N/A N/A
ENSG00000128917 ENST00000249749 20.172±0.00 9.350±0.00 N/A 0.499±0.38 4.869±1.78 6.364±5.36 3.540±2.10 1.318±0.75 1.295±0.52 21.514±17.85 1.090±0.50 4.742±2.21 10.438±2.28 1.846±0.42
ENST00000557876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251161 ENST00000503052 0.116±0.00 0.303±0.00 0.135±0.00 0.281±0.15 0.116±0.00 0.176±0.00 0.067±0.00 0.125±0.00 0.373±0.00 0.117±0.00 0.136±0.00 0.174±0.11 0.131±0.03 1.161±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027314 ENSMUST00000102517 16.493±7.17 7.184±1.83 2.649±0.24 1.738±1.03 6.765±2.80 7.183±0.46 6.687±0.85 4.824±0.69 1.100±0.29 37.348±11.00 2.015±0.34 6.935±2.17 2.012±0.52 0.223±0.08
ENSMUST00000127102 N/A N/A N/A N/A 3.708±0.00 N/A 6.037±1.54 5.030±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000034216 ENSMUST00000037280 6.801±2.93 12.991±0.35 4.492±1.73 9.379±0.24 10.587±3.60 11.143±1.02 2.892±1.71 9.426±3.03 3.860±1.49 8.285±3.26 2.078±0.44 12.558±3.83 3.907±1.71 3.302±1.15
ENSMUST00000139367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151500 N/A N/A 1.816±0.26 14.434±0.00 N/A N/A 2.326±0.00 N/A 0.442±0.03 N/A 1.536±0.45 4.786±3.18 4.665±2.09 1.609±0.00

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