C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000796_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104140-ENSG00000104142 CGP 9606 15:40872214-40903975
GeneTranscriptPositionBiotype
ENSG00000104140 (RHOV)
ras homolog family member V
ENST00000220507 (RHOV-001) 40872214-40874289 protein_coding
ENSG00000104142 (VPS18)
vacuolar protein sorting 18 homolog (S. cerevisiae)
ENST00000220509 (VPS18-001) 40894430-40903975 protein_coding
ENST00000558474 (VPS18-004) 40894467-40902861 protein_coding
ENST00000558855 (VPS18-003) 40894452-40899397 nonsense_mediated_decay
ENSG00000264256 (AC025166.1)
ENST00000582049 (AC025166.1-201) 40875313-40875410 miRNA
ENSG00000274798 (CTD-2129N1.1)
ENST00000612411 (CTD-2129N1.1-001) 40874433-40874595 lincRNA
CIL_000796_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034226-ENSMUSG00000034216 CGP 10090 2:119269201-119298453
GeneTranscriptPositionBiotype
ENSMUSG00000034216 (Vps18)
vacuolar protein sorting 18 (yeast)
ENSMUST00000037280 (Vps18-001) 119288742-119298453 protein_coding
ENSMUST00000139367 (Vps18-002) 119288740-119295487 retained_intron
ENSMUST00000151500 (Vps18-003) 119288787-119298326 processed_transcript
ENSMUSG00000034226 (Rhov)
ras homolog gene family, member V
ENSMUST00000037360 (Rhov-001) 119269201-119271272 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000796_0001ENSG00000104140ENST00000220507ENSG00000104142ENST00000220509ENST00000558474ENST00000558855ENSG00000264256ENST00000582049ENSG00000274798ENST00000612411CIL_000796_0002ENSMUSG00000034216ENSMUST00000037280ENSMUST00000139367ENSMUST00000151500ENSMUSG00000034226ENSMUST00000037360
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000796_0001ENSG00000104140ENST00000220507ENSG00000104142ENST00000220509ENST00000558855ENSG00000264256ENST00000582049ENSG00000274798ENST00000612411CIL_000796_0002ENSMUSG00000034216ENSMUST00000037280ENSMUST00000151500ENSMUSG00000034226ENSMUST00000037360
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104140 ENST00000220507 0.240±0.00 0.107±0.00 N/A 1.013±0.48 3.668±3.58 1.437±0.60 N/A 1.169±1.13 0.678±0.00 9.354±0.00 N/A 3.196±3.54 6.298±1.93 0.476±0.32
ENSG00000104142 ENST00000220509 4.941±0.00 6.428±0.00 1.303±0.00 4.851±1.18 4.701±2.85 2.128±0.83 3.149±1.72 4.715±3.47 2.192±0.29 3.385±1.40 3.294±2.11 6.822±4.70 6.690±1.79 4.619±1.01
ENST00000558474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558855 N/A N/A N/A N/A N/A N/A N/A 0.527±0.00 1.088±0.00 N/A 0.625±0.00 1.311±0.00 N/A N/A
ENSG00000264256 ENST00000582049 N/A 0.511±0.00 N/A N/A 0.800±0.00 N/A N/A 1.583±0.00 N/A 0.276±0.00 N/A N/A N/A 1.393±0.00
ENSG00000274798 ENST00000612411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A 0.133±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034216 ENSMUST00000037280 6.801±2.93 12.991±0.35 4.492±1.73 9.379±0.24 10.587±3.60 11.143±1.02 2.892±1.71 9.426±3.03 3.860±1.49 8.285±3.26 2.078±0.44 12.558±3.83 3.907±1.71 3.302±1.15
ENSMUST00000139367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151500 N/A N/A 1.816±0.26 14.434±0.00 N/A N/A 2.326±0.00 N/A 0.442±0.03 N/A 1.536±0.45 4.786±3.18 4.665±2.09 1.609±0.00
ENSMUSG00000034226 ENSMUST00000037360 0.102±0.06 0.313±0.18 12.818±1.87 4.006±0.39 2.040±0.34 1.164±0.40 0.044±0.01 3.312±0.52 0.043±0.02 1.063±0.39 0.074±0.03 0.641±0.20 1.293±0.54 3.280±4.01

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