C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 18 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220509 VPS18-001 ENSG00000104142 9606 + 15:40894430-40903975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000220509
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000220509 4.941±0.00 6.428±0.00 1.303±0.00 4.851±1.18 4.701±2.85 2.128±0.83 3.149±1.72 4.715±3.47 2.192±0.29 3.385±1.40 3.294±2.11 6.822±4.70 6.690±1.79 4.619±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000796 CIL_000796_0001 CGP 15:40872214-40903975
CIL_000799 CIL_000799_0001 CGP 15:40894430-40939072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005769 IEA early endosome
GO:0005884 IEA actin filament
GO:0006886 IEA intracellular protein transport
GO:0007032 IDA endosome organization
GO:0007040 IDA lysosome organization
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0046718 IEA viral entry into host cell
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037280 Vps18-001 protein_coding Mus_musculus 0 3437
ENSMUST00000151500 Vps18-003 processed_transcript Mus_musculus 0 3312
ENSMUST00000139367 Vps18-002 retained_intron Mus_musculus 0 2612

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