C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000052150-ENSDARG00000042338 CGP 7955 3:53637984-53730531
GeneTranscriptPositionBiotype
ENSDARG00000042338 (lpar2a)
lysophosphatidic acid receptor 2a 		ENSDART00000062081 (lpar2a-001) 53721216-53730531 protein_coding
ENSDARG00000052150 (pbx4)
pre-B-cell leukemia transcription factor 4 		ENSDART00000104683 (pbx4-001) 53637984-53714491 protein_coding
ENSDART00000156935 (pbx4-002) 53690791-53712514 protein_coding
CIL_0004NP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105717-ENSG00000064547 CGP 9606 19:19561707-19628930
GeneTranscriptPositionBiotype
ENSG00000064547 (LPAR2)
lysophosphatidic acid receptor 2 		ENST00000407877 (LPAR2-002) 19623669-19628239 protein_coding
ENST00000542587 (LPAR2-003) 19623669-19628930 protein_coding
ENST00000586703 (LPAR2-001) 19623668-19628208 protein_coding
ENST00000588233 (LPAR2-004) 19627061-19628761 protein_coding
ENST00000588461 (LPAR2-006) 19627224-19628529 protein_coding
ENST00000589311 (LPAR2-005) 19627848-19628550 processed_transcript
ENST00000590629 (LPAR2-007) 19627505-19628221 retained_intron
ENST00000591042 (LPAR2-008) 19627044-19628215 protein_coding
ENST00000592061 (LPAR2-009) 19627209-19627800 protein_coding
ENSG00000105717 (PBX4)
pre-B-cell leukemia homeobox 4 		ENST00000251203 (PBX4-001) 19561713-19618916 protein_coding
ENST00000557978 (PBX4-003) 19561707-19618693 nonsense_mediated_decay
ENST00000558222 (PBX4-002) 19564775-19618681 nonsense_mediated_decay
ENST00000558276 (PBX4-004) 19561707-19563824 retained_intron
ENST00000559735 (PBX4-005) 19570226-19579954 retained_intron
ENSG00000259242 (AC002306.1)
 ENST00000559614 (AC002306.1-001) 19606350-19608660 antisense
ENSG00000267178 (PHF5CP)
PHD finger protein 5C pseudogene 		ENST00000591298 (PHF5CP-001) 19588091-19588415 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NP_0001ENSDARG00000042338ENSDART00000062081ENSDARG00000052150ENSDART00000104683ENSDART00000156935CIL_0004NP_0002ENSG00000064547ENST00000407877ENST00000542587ENST00000586703ENST00000588233ENST00000588461ENST00000589311ENST00000590629ENST00000591042ENST00000592061ENSG00000105717ENST00000251203ENST00000557978ENST00000558222ENST00000558276ENST00000559735ENSG00000259242ENST00000559614ENSG00000267178ENST00000591298
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NP_0001ENSDARG00000042338ENSDART00000062081ENSDARG00000052150ENSDART00000104683ENSDART00000156935CIL_0004NP_0002ENSG00000064547ENST00000407877ENST00000542587ENST00000586703ENST00000588461ENST00000590629ENST00000591042ENST00000592061ENSG00000105717ENST00000251203ENST00000557978ENST00000558222ENST00000558276ENST00000559735ENSG00000259242ENST00000559614ENSG00000267178ENST00000591298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042338 ENSDART00000062081 N/A N/A N/A 0.735±0.08 N/A N/A 1.942±0.36 4.802±0.00 0.600±0.00 N/A 0.737±0.00 N/A N/A N/A
ENSDARG00000052150 ENSDART00000104683 N/A N/A N/A 8.413±2.48 N/A N/A 6.370±2.05 2.702±0.00 0.672±0.00 N/A 2.496±0.00 N/A N/A N/A
ENSDART00000156935 N/A N/A N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064547 ENST00000407877 N/A 2.532±0.00 0.019±0.00 0.256±0.00 1.653±0.53 0.542±0.36 0.118±0.04 2.416±0.00 0.331±0.06 1.047±0.32 N/A 5.983±5.72 2.917±0.69 19.978±8.44
ENST00000542587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.814±0.00 N/A N/A
ENST00000586703 N/A 1.531±0.00 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.962±0.00 N/A
ENST00000588233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588461 N/A N/A N/A 0.862±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590629 N/A N/A N/A N/A 0.600±0.00 N/A N/A N/A 0.259±0.00 0.598±0.00 N/A N/A N/A N/A
ENST00000591042 N/A N/A N/A N/A N/A N/A N/A 0.922±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592061 N/A N/A N/A N/A N/A N/A N/A 2.131±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000105717 ENST00000251203 N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A N/A 0.263±0.00 0.362±0.00 N/A
ENST00000557978 0.219±0.00 1.007±0.00 N/A N/A N/A 0.149±0.00 0.103±0.00 N/A 0.092±0.00 1.148±0.00 N/A 0.935±0.77 0.080±0.00 4.042±0.00
ENST00000558222 0.120±0.00 N/A 0.380±0.00 0.082±0.00 N/A 0.119±0.02 N/A N/A 0.292±0.16 N/A N/A 0.935±0.70 0.463±0.21 4.084±0.00
ENST00000558276 0.673±0.00 3.965±0.00 N/A 0.850±0.00 N/A 0.595±0.00 N/A 0.312±0.00 N/A 1.268±0.00 N/A 1.041±0.26 N/A 1.881±0.00
ENST00000559735 N/A N/A N/A 0.051±0.00 N/A 0.493±0.00 N/A N/A N/A 0.915±0.00 N/A N/A 0.242±0.00 N/A
ENSG00000259242 ENST00000559614 0.016±0.00 0.545±0.00 N/A 0.238±0.00 0.140±0.00 0.068±0.01 0.399±0.00 0.088±0.00 0.060±0.00 0.299±0.06 0.045±0.00 0.111±0.02 N/A 0.138±0.09
ENSG00000267178 ENST00000591298 N/A 0.145±0.00 N/A N/A 0.049±0.00 N/A N/A 0.288±0.00 0.174±0.00 N/A N/A 0.749±0.00 N/A 0.106±0.00

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