C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557978 PBX4-003 ENSG00000105717 9606 - 19:19561707-19618693 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartLiverLungOvaryPlacentaTestisENST00000557978
Transcript ID Adipose Adrenal Colon Heart Liver Lung Ovary Placenta Testis
ENST00000557978 0.219±0.00 1.007±0.00 0.149±0.00 0.103±0.00 0.092±0.00 1.148±0.00 0.935±0.77 0.080±0.00 4.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NP CIL_0004NP_0002 CGP 19:19561707-19628930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081503 Pbx4-004 protein_coding Mus_musculus 0 451
ENSMUST00000156319 Pbx4-002 nonsense_mediated_decay Mus_musculus 0 381
ENSMUST00000134777 Pbx4-001 nonsense_mediated_decay Mus_musculus 0 333
ENSMUST00000156251 Pbx4-008 retained_intron Mus_musculus 0 268
ENSMUST00000151975 Pbx4-005 retained_intron Mus_musculus 0 211
ENSMUST00000132899 Pbx4-003 nonsense_mediated_decay Mus_musculus 0 209
ENSMUST00000131637 Pbx4-007 protein_coding Mus_musculus 0 209
ENSMUST00000135952 Pbx4-009 retained_intron Mus_musculus 8.99999e-40 169
ENSDART00000104683 pbx4-001 protein_coding Danio_rerio 1e-38 165
ENSDART00000127078 PBX4 (2 of 2)-201 protein_coding Danio_rerio 0.000007 57

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