C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558222 PBX4-002 ENSG00000105717 9606 - 19:19564775-19618681 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverOvaryPlacentaTestisENST00000558222
Transcript ID Adipose Bladder Brain Colon Liver Ovary Placenta Testis
ENST00000558222 0.120±0.00 0.380±0.00 0.082±0.00 0.119±0.02 0.292±0.16 0.935±0.70 0.463±0.21 4.084±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NP CIL_0004NP_0002 CGP 19:19561707-19628930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081503 Pbx4-004 protein_coding Mus_musculus 0 433
ENSMUST00000156319 Pbx4-002 nonsense_mediated_decay Mus_musculus 0 363
ENSMUST00000156251 Pbx4-008 retained_intron Mus_musculus 0 272
ENSMUST00000134777 Pbx4-001 nonsense_mediated_decay Mus_musculus 0 270
ENSMUST00000151975 Pbx4-005 retained_intron Mus_musculus 0 211
ENSMUST00000132899 Pbx4-003 nonsense_mediated_decay Mus_musculus 0 209
ENSMUST00000131637 Pbx4-007 protein_coding Mus_musculus 0 209
ENSMUST00000135952 Pbx4-009 retained_intron Mus_musculus 4.99997e-41 172
ENSDART00000104683 pbx4-001 protein_coding Danio_rerio 8e-39 165
ENSDART00000127078 PBX4 (2 of 2)-201 protein_coding Danio_rerio 0.000005 57

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