C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251203 PBX4-001 ENSG00000105717 9606 - 19:19561713-19618916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryPlacentaENST00000251203
Transcript ID Kidney Ovary Placenta
ENST00000251203 0.507±0.00 0.263±0.00 0.362±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NP CIL_0004NP_0002 CGP 19:19561707-19628930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001741 IEA XY body
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC:IEA nucleus
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0043565 ISS sequence-specific DNA binding
GO:0045893 IC positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081503 Pbx4-004 protein_coding Mus_musculus 0 966
ENSDART00000104683 pbx4-001 protein_coding Danio_rerio 0 453
ENSMUST00000156319 Pbx4-002 nonsense_mediated_decay Mus_musculus 0 427
ENSMUST00000134777 Pbx4-001 nonsense_mediated_decay Mus_musculus 0 335
ENSDART00000003750 pbx1a-201 protein_coding Danio_rerio 0 278
ENSDART00000073947 pbx1a-203 protein_coding Danio_rerio 0 278
ENSDART00000127078 PBX4 (2 of 2)-201 protein_coding Danio_rerio 0 278
ENSMUST00000156251 Pbx4-008 retained_intron Mus_musculus 0 272
ENSDART00000038419 pbx1a-202 protein_coding Danio_rerio 0 230
ENSMUST00000151975 Pbx4-005 retained_intron Mus_musculus 0 211
ENSMUST00000132899 Pbx4-003 nonsense_mediated_decay Mus_musculus 0 209
ENSMUST00000131637 Pbx4-007 protein_coding Mus_musculus 0 209
ENSMUST00000135952 Pbx4-009 retained_intron Mus_musculus 8.00001e-41 172

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