C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107438 PDLIM1 9606 - 10:95237572-95291024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329399 PDLIM1-001 95237572-95291024 protein_coding
  ENST00000477757 PDLIM1-002 95238010-95291012 processed_transcript
  ENST00000490391 PDLIM1-005 95238634-95247620 processed_transcript
  ENST00000492511 PDLIM1-004 95237940-95238848 processed_transcript
  ENST00000493949 PDLIM1-003 95263876-95273406 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329399ENST00000492511ENST00000493949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329399 165.486±0.00 260.731±0.00 1.179±0.00 5.589±5.33 50.970±38.88 69.228±56.13 72.188±68.78 25.145±17.46 47.366±0.00 260.918±254.07 90.945±69.69 65.994±51.14 182.642±13.74 28.517±19.90
ENST00000492511 N/A N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 230.455±0.00 11.898±0.00
ENST00000493949 N/A N/A 0.644±0.00 0.223±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0001 VISTA 10:95113366-95716533
CIL_0007T2 CIL_0007T2_0001 VISTA 10:95207959-95809585
CIL_00067J CIL_00067J_0001 CGP 10:95237572-95561414

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003713 IEA transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006979 TAS response to oxidative stress
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019845 pdlim1 PDZ and LIM domain 1 (elfin) protein_coding Danio_rerio
ENSMUSG00000055044 Pdlim1 PDZ and LIM domain 1 (elfin) protein_coding Mus_musculus

Loading