C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492511 PDLIM1-004 ENSG00000107438 9606 - 10:95237940-95238848 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENST00000492511
Transcript ID Brain Placenta Testis
ENST00000492511 0.313±0.00 230.455±0.00 11.898±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0001 VISTA 10:95113366-95716533
CIL_0007T2 CIL_0007T2_0001 VISTA 10:95207959-95809585
CIL_00067J CIL_00067J_0001 CGP 10:95237572-95561414

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182540 Pdlim1-005 retained_intron Mus_musculus 0 390
ENSMUST00000182813 Pdlim1-004 retained_intron Mus_musculus 0 372
ENSMUST00000068439 Pdlim1-001 protein_coding Mus_musculus 0 372
ENSMUST00000182436 Gm5864-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000120359 Gm12104-001 processed_pseudogene Mus_musculus 0 313

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