C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108604 SMARCD2 9606 - 17:63832081-63843065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225742 SMARCD2-002 63832604-63842466 protein_coding
  ENST00000323347 SMARCD2-003 63832502-63838728 protein_coding
  ENST00000448276 SMARCD2-001 63832084-63842940 protein_coding
  ENST00000450364 SMARCD2-012 63832639-63834744 protein_coding
  ENST00000577686 SMARCD2-008 63836746-63842510 retained_intron
  ENST00000577990 SMARCD2-005 63842466-63843065 protein_coding
  ENST00000578234 SMARCD2-009 63834178-63835657 retained_intron
  ENST00000580054 SMARCD2-007 63835491-63837625 nonsense_mediated_decay
  ENST00000581832 SMARCD2-011 63834362-63835052 retained_intron
  ENST00000584400 SMARCD2-006 63833912-63842698 nonsense_mediated_decay
  ENST00000584483 SMARCD2-010 63833705-63835145 retained_intron
  ENST00000613943 SMARCD2-201 63832081-63842674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225742ENST00000448276ENST00000578234ENST00000613943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225742 N/A N/A N/A 3.289±0.00 1.293±0.00 5.130±0.00 N/A N/A N/A N/A N/A 8.855±6.63 8.168±0.00 11.087±0.00
ENST00000448276 N/A N/A N/A N/A 3.845±0.60 4.322±1.36 1.780±0.04 3.827±0.00 2.407±0.00 6.597±2.16 2.011±0.00 11.763±6.24 9.216±0.71 12.151±0.00
ENST00000578234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.726±0.00 N/A 10.435±0.00 N/A
ENST00000613943 23.917±0.00 29.401±0.00 2.780±0.00 4.842±0.00 9.530±8.63 10.306±8.22 4.653±0.00 17.974±8.14 17.334±10.67 10.689±5.34 3.494±0.87 15.435±8.56 32.409±1.27 29.447±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006QA CIL_0006QA_0001 CGP 17:63827152-63843065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088877 smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein_coding Danio_rerio
ENSMUSG00000078619 Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein_coding Mus_musculus

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