C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323347 SMARCD2-003 ENSG00000108604 9606 - 17:63832502-63838728 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006QA CIL_0006QA_0001 CGP 17:63827152-63843065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106843 Smarcd2-002 protein_coding Mus_musculus 0 2230
ENSMUST00000021052 Smarcd2-001 protein_coding Mus_musculus 0 2224
ENSMUST00000140255 Smarcd2-009 protein_coding Mus_musculus 0 976
ENSMUST00000174253 Smarcd2-007 processed_transcript Mus_musculus 0 708
ENSMUST00000132278 Smarcd2-004 retained_intron Mus_musculus 0 686
ENSMUST00000155514 Smarcd2-005 retained_intron Mus_musculus 0 673
ENSDART00000127343 smarcd2-001 protein_coding Danio_rerio 0 577
ENSMUST00000106841 Smarcd2-006 retained_intron Mus_musculus 0 516
ENSMUST00000155243 Smarcd2-003 processed_transcript Mus_musculus 0 390
ENSMUST00000174017 Smarcd2-008 retained_intron Mus_musculus 0 339

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