C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225742 SMARCD2-002 ENSG00000108604 9606 - 17:63832604-63842466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryPlacentaTestisENST00000225742
Transcript ID Brain Breast Colon Ovary Placenta Testis
ENST00000225742 3.289±0.00 1.293±0.00 5.130±0.00 8.855±6.63 8.168±0.00 11.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006QA CIL_0006QA_0001 CGP 17:63827152-63843065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021052 Smarcd2-001 protein_coding Mus_musculus 0 2117
ENSMUST00000106843 Smarcd2-002 protein_coding Mus_musculus 0 2117
ENSMUST00000140255 Smarcd2-009 protein_coding Mus_musculus 0 976
ENSMUST00000174253 Smarcd2-007 processed_transcript Mus_musculus 0 708
ENSMUST00000132278 Smarcd2-004 retained_intron Mus_musculus 0 686
ENSMUST00000155514 Smarcd2-005 retained_intron Mus_musculus 0 673
ENSDART00000127343 smarcd2-001 protein_coding Danio_rerio 0 577
ENSMUST00000106841 Smarcd2-006 retained_intron Mus_musculus 0 516
ENSMUST00000155243 Smarcd2-003 processed_transcript Mus_musculus 0 390
ENSMUST00000174017 Smarcd2-008 retained_intron Mus_musculus 0 327

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