C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078619 Smarcd2 10090 - 11:106263179-106272972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021052 Smarcd2-001 106263179-106272972 protein_coding
  ENSMUST00000106841 Smarcd2-006 106263799-106264936 retained_intron
  ENSMUST00000106843 Smarcd2-002 106263179-106267799 protein_coding
  ENSMUST00000132278 Smarcd2-004 106264733-106266071 retained_intron
  ENSMUST00000140255 Smarcd2-009 106264019-106265746 protein_coding
  ENSMUST00000155243 Smarcd2-003 106265312-106272965 processed_transcript
  ENSMUST00000155514 Smarcd2-005 106263714-106265662 retained_intron
  ENSMUST00000174017 Smarcd2-008 106266891-106267528 retained_intron
  ENSMUST00000174253 Smarcd2-007 106265739-106267483 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021052ENSMUST00000106843ENSMUST00000132278ENSMUST00000140255ENSMUST00000155243ENSMUST00000155514ENSMUST00000174253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021052 25.318±9.22 35.578±13.26 18.423±5.37 4.920±1.71 23.755±10.56 31.231±7.45 4.959±0.77 11.693±1.08 18.409±6.40 26.022±3.28 3.161±1.31 21.122±6.88 16.737±3.00 11.683±5.13
ENSMUST00000106843 9.126±2.14 11.638±1.42 14.474±1.68 3.360±0.27 12.710±1.33 7.926±1.02 2.225±0.74 2.974±0.44 6.684±0.36 9.857±0.63 2.132±1.19 9.595±3.84 4.783±0.00 4.478±1.04
ENSMUST00000132278 N/A N/A N/A N/A N/A N/A 8.595±0.00 N/A 25.490±1.41 N/A N/A N/A N/A N/A
ENSMUST00000140255 N/A N/A N/A N/A 30.072±9.35 N/A N/A 15.881±0.00 11.417±0.21 N/A N/A 33.637±11.38 N/A 9.736±3.52
ENSMUST00000155243 N/A N/A N/A 12.756±0.00 N/A N/A N/A N/A N/A N/A N/A 97.883±0.00 52.169±14.16 45.384±0.00
ENSMUST00000155514 N/A N/A N/A 5.248±0.00 N/A N/A N/A N/A N/A N/A 1.135±0.00 N/A N/A N/A
ENSMUST00000174253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.504±0.00 10.068±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016514 IEA SWI/SNF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088877 smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein_coding Danio_rerio
ENSG00000108604 SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein_coding Homo_sapiens

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