C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptogyrin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108639 SYNGR2 9606 + 17:78168558-78173527 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225777 SYNGR2-001 78168558-78173527 protein_coding
  ENST00000585591 SYNGR2-009 78168594-78173335 protein_coding
  ENST00000588282 SYNGR2-003 78168611-78172719 protein_coding
  ENST00000589168 SYNGR2-004 78168618-78173527 protein_coding
  ENST00000589183 SYNGR2-007 78168602-78171977 nonsense_mediated_decay
  ENST00000589711 SYNGR2-002 78168604-78173527 protein_coding
  ENST00000590201 SYNGR2-006 78169158-78173527 protein_coding
  ENST00000591770 SYNGR2-008 78168610-78171574 retained_intron
  ENST00000592456 SYNGR2-005 78169684-78172719 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000585591ENST00000588282ENST00000590201ENST00000592456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000585591 N/A N/A 4.997±0.00 1.712±0.00 5.210±0.00 10.168±0.00 2.800±0.00 4.399±0.00 5.491±0.00 8.758±0.00 N/A 10.579±4.54 N/A N/A
ENST00000588282 39.309±0.00 75.824±0.00 2.737±0.00 9.891±6.71 26.914±18.03 24.857±12.66 23.548±19.02 32.073±23.29 20.503±16.70 85.102±76.05 103.738±75.12 39.690±19.72 106.539±41.74 18.564±3.30
ENST00000590201 N/A N/A N/A N/A N/A 1.906±0.00 N/A N/A 0.719±0.00 N/A N/A N/A N/A N/A
ENST00000592456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.644±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0004UI CIL_0004UI_0001 CGP 17:78146353-78173527
CIL_0003UA CIL_0003UA_0002 CGP 17:78168558-78187233

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006605 IEA protein targeting
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA:NAS integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030752 syngr2b synaptogyrin 2b protein_coding Danio_rerio
ENSDARG00000086225 syngr2b synaptogyrin 2b protein_coding Danio_rerio
ENSMUSG00000048277 Syngr2 synaptogyrin 2 protein_coding Mus_musculus

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