C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptogyrin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048277 Syngr2 10090 + 11:117809668-117814283 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026649 Syngr2-001 117809668-117814283 protein_coding
  ENSMUST00000120928 Syngr2-003 117809696-117814283 protein_coding
  ENSMUST00000143852 Syngr2-002 117812258-117813118 protein_coding
  ENSMUST00000175737 Syngr2-007 117809712-117813732 protein_coding
  ENSMUST00000176936 Syngr2-006 117812991-117813412 retained_intron
  ENSMUST00000177131 Syngr2-005 117809683-117813826 protein_coding
  ENSMUST00000177241 Syngr2-004 117809693-117813475 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026649ENSMUST00000120928ENSMUST00000177131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026649 49.824±1.76 87.661±7.41 49.029±4.08 5.247±3.56 94.566±35.77 213.686±43.74 83.292±7.83 64.023±1.56 50.213±11.39 85.130±3.08 124.063±6.97 62.157±27.58 46.509±27.78 10.968±5.46
ENSMUST00000120928 N/A N/A N/A N/A 28.470±0.00 N/A N/A N/A N/A N/A N/A 28.440±2.62 N/A N/A
ENSMUST00000177131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.164±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0004UI CIL_0004UI_0002 CGP 11:117797660-117814283

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006605 ISA protein targeting
GO:0008021 IDA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030752 syngr2b synaptogyrin 2b protein_coding Danio_rerio
ENSDARG00000086225 syngr2b synaptogyrin 2b protein_coding Danio_rerio
ENSG00000108639 SYNGR2 synaptogyrin 2 protein_coding Homo_sapiens

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