C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | synaptogyrin 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000589168  |
SYNGR2-004 |
ENSG00000108639 |
9606 | + |
17:78168618-78173527  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007YS | CIL_0007YS_0001 | VISTA | 17:77940736-78544976 |
| CIL_0004UI | CIL_0004UI_0001 | CGP | 17:78146353-78173527 |
| CIL_0003UA | CIL_0003UA_0002 | CGP | 17:78168558-78187233 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0016020 | IEA | membrane |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000175737
|
Syngr2-007 | protein_coding | Mus_musculus | 0 | 603 |
|
ENSMUST00000177131
|
Syngr2-005 | protein_coding | Mus_musculus | 0 | 377 |
|
ENSMUST00000026649
|
Syngr2-001 | protein_coding | Mus_musculus | 0 | 377 |
|
ENSMUST00000143852
|
Syngr2-002 | protein_coding | Mus_musculus | 0 | 254 |
|
ENSMUST00000120928
|
Syngr2-003 | protein_coding | Mus_musculus | 0 | 239 |
|
ENSMUST00000177241
|
Syngr2-004 | nonsense_mediated_decay | Mus_musculus | 0 | 235 |
|
ENSMUST00000176936
|
Syngr2-006 | retained_intron | Mus_musculus | 1e-35 | 156 |
|
ENSMUST00000132298
|
Gm20708-001 | protein_coding | Mus_musculus | 8e-27 | 126 |
