C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588282 SYNGR2-003 ENSG00000108639 9606 + 17:78168611-78172719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588282 39.309±0.00 75.824±0.00 2.737±0.00 9.891±6.71 26.914±18.03 24.857±12.66 23.548±19.02 32.073±23.29 20.503±16.70 85.102±76.05 103.738±75.12 39.690±19.72 106.539±41.74 18.564±3.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_0004UI CIL_0004UI_0001 CGP 17:78146353-78173527
CIL_0003UA CIL_0003UA_0002 CGP 17:78168558-78187233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026649 Syngr2-001 protein_coding Mus_musculus 0 555
ENSMUST00000177131 Syngr2-005 protein_coding Mus_musculus 0 553
ENSMUST00000175737 Syngr2-007 protein_coding Mus_musculus 0 366
ENSMUST00000143852 Syngr2-002 protein_coding Mus_musculus 0 361
ENSMUST00000120928 Syngr2-003 protein_coding Mus_musculus 0 357
ENSMUST00000177241 Syngr2-004 nonsense_mediated_decay Mus_musculus 0 235
ENSMUST00000176936 Syngr2-006 retained_intron Mus_musculus 3e-40 171
ENSMUST00000132298 Gm20708-001 protein_coding Mus_musculus 3e-30 137

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