C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB5C, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108774 RAB5C 9606 - 17:42124976-42155044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000346213 RAB5C-001 42124976-42155017 protein_coding
  ENST00000393860 RAB5C-201 42124978-42155044 protein_coding
  ENST00000546881 RAB5C-007 42128551-42154992 retained_intron
  ENST00000547517 RAB5C-002 42125667-42154988 protein_coding
  ENST00000550013 RAB5C-003 42130161-42155017 retained_intron
  ENST00000550406 RAB5C-008 42128744-42154964 protein_coding
  ENST00000550504 RAB5C-004 42128692-42136484 protein_coding
  ENST00000551338 RAB5C-006 42126523-42128759 protein_coding
  ENST00000552162 RAB5C-005 42128330-42136431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346213ENST00000552162
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346213 110.678±0.00 104.506±0.00 6.055±0.00 55.313±30.82 44.330±33.70 36.008±25.76 14.338±11.10 73.228±58.38 32.857±22.91 56.995±49.17 11.947±6.88 95.300±56.69 128.177±20.88 60.831±20.74
ENST00000552162 N/A N/A 10.893±0.00 21.966±0.00 13.198±0.00 11.425±0.00 N/A 16.864±0.00 N/A 7.446±0.00 N/A 18.872±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IY CIL_0002IY_0001 CGP 17:42121431-42155044
CIL_0002J1 CIL_0002J1_0001 CGP 17:42124976-42181278

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005811 IDA lipid particle
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026712 rab5c RAB5C, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000019173 Rab5c RAB5C, member RAS oncogene family protein_coding Mus_musculus

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