C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002IY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000260325-ENSG00000108774 CGP 9606 17:42121431-42155044
GeneTranscriptPositionBiotype
ENSG00000108774 (RAB5C)
RAB5C, member RAS oncogene family
ENST00000346213 (RAB5C-001) 42124976-42155017 protein_coding
ENST00000393860 (RAB5C-201) 42124978-42155044 protein_coding
ENST00000546881 (RAB5C-007) 42128551-42154992 retained_intron
ENST00000547517 (RAB5C-002) 42125667-42154988 protein_coding
ENST00000550013 (RAB5C-003) 42130161-42155017 retained_intron
ENST00000550406 (RAB5C-008) 42128744-42154964 protein_coding
ENST00000550504 (RAB5C-004) 42128692-42136484 protein_coding
ENST00000551338 (RAB5C-006) 42126523-42128759 protein_coding
ENST00000552162 (RAB5C-005) 42128330-42136431 protein_coding
ENSG00000260325 (HSPB9)
heat shock protein, alpha-crystallin-related, B9
ENST00000565659 (HSPB9-001) 42121431-42123352 protein_coding
CIL_0002IY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017832-ENSMUSG00000019173 CGP 10090 11:100713850-100738215
GeneTranscriptPositionBiotype
ENSMUSG00000017832 (Hspb9)
heat shock protein, alpha-crystallin-related, B9
ENSMUST00000017976 (Hspb9-001) 100713922-100714573 protein_coding
ENSMUST00000169833 (Hspb9-201) 100713850-100714575 protein_coding
ENSMUSG00000019173 (Rab5c)
RAB5C, member RAS oncogene family
ENSMUST00000019317 (Rab5c-002) 100715011-100738215 protein_coding
ENSMUST00000107364 (Rab5c-001) 100715009-100738215 protein_coding
ENSMUST00000155500 (Rab5c-003) 100719977-100738176 protein_coding
ENSMUST00000155843 (Rab5c-004) 100718500-100730215 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IY_0001ENSG00000108774ENST00000346213ENST00000393860ENST00000546881ENST00000547517ENST00000550013ENST00000550406ENST00000550504ENST00000551338ENST00000552162ENSG00000260325ENST00000565659CIL_0002IY_0002ENSMUSG00000017832ENSMUST00000017976ENSMUST00000169833ENSMUSG00000019173ENSMUST00000019317ENSMUST00000107364ENSMUST00000155500ENSMUST00000155843
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002IY_0001ENSG00000108774ENST00000346213ENST00000552162ENSG00000260325ENST00000565659CIL_0002IY_0002ENSMUSG00000017832ENSMUST00000017976ENSMUST00000169833ENSMUSG00000019173ENSMUST00000019317ENSMUST00000107364
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108774 ENST00000346213 110.678±0.00 104.506±0.00 6.055±0.00 55.313±30.82 44.330±33.70 36.008±25.76 14.338±11.10 73.228±58.38 32.857±22.91 56.995±49.17 11.947±6.88 95.300±56.69 128.177±20.88 60.831±20.74
ENST00000393860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552162 N/A N/A 10.893±0.00 21.966±0.00 13.198±0.00 11.425±0.00 N/A 16.864±0.00 N/A 7.446±0.00 N/A 18.872±0.00 N/A N/A
ENSG00000260325 ENST00000565659 0.086±0.00 0.243±0.00 0.063±0.00 0.140±0.00 0.236±0.00 0.150±0.00 0.026±0.00 0.474±0.34 0.737±0.00 0.307±0.09 0.105±0.00 0.406±0.21 0.125±0.01 6.992±0.48
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017832 ENSMUST00000017976 N/A N/A 0.042±0.02 0.106±0.00 0.245±0.02 N/A 0.230±0.10 0.332±0.12 0.066±0.00 N/A 0.128±0.06 0.457±0.42 0.303±0.01 581.914±75.44
ENSMUST00000169833 0.436±0.10 0.494±0.19 0.118±0.01 0.138±0.07 0.504±0.14 0.484±0.18 0.247±0.00 0.550±0.17 0.195±0.09 0.735±0.17 0.092±0.00 0.282±0.11 0.381±0.00 N/A
ENSMUSG00000019173 ENSMUST00000019317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00 N/A N/A N/A
ENSMUST00000107364 88.161±27.82 93.874±9.16 31.869±7.81 39.149±14.96 77.036±15.52 109.274±24.20 10.543±5.40 133.891±43.55 46.585±30.43 75.595±7.27 12.190±3.38 87.034±49.08 36.013±16.69 16.462±1.55
ENSMUST00000155500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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