C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB5C, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346213 RAB5C-001 ENSG00000108774 9606 - 17:42124976-42155017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346213 110.678±0.00 104.506±0.00 6.055±0.00 55.313±30.82 44.330±33.70 36.008±25.76 14.338±11.10 73.228±58.38 32.857±22.91 56.995±49.17 11.947±6.88 95.300±56.69 128.177±20.88 60.831±20.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IY CIL_0002IY_0001 CGP 17:42121431-42155044
CIL_0002J1 CIL_0002J1_0001 CGP 17:42124976-42181278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0005811 IDA lipid particle
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048227 IMP plasma membrane to endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107364 Rab5c-001 protein_coding Mus_musculus 0 1858
ENSMUST00000019317 Rab5c-002 protein_coding Mus_musculus 0 1050
ENSDART00000129730 rab5aa-201 protein_coding Danio_rerio 0 479
ENSDART00000034124 rab5aa-001 protein_coding Danio_rerio 0 479
ENSMUST00000155843 Rab5c-004 protein_coding Mus_musculus 0 401
ENSMUST00000000727 Rab5b-201 protein_coding Mus_musculus 0 383
ENSMUST00000120190 Gm13991-001 processed_pseudogene Mus_musculus 0 381
ENSDART00000142127 rab5aa-002 retained_intron Danio_rerio 0 233
ENSMUST00000155500 Rab5c-003 protein_coding Mus_musculus 0 206

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