C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB5C, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552162 RAB5C-005 ENSG00000108774 9606 - 17:42128330-42136431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLungOvaryENST00000552162
Transcript ID Bladder Brain Breast Colon Kidney Lung Ovary
ENST00000552162 10.893±0.00 21.966±0.00 13.198±0.00 11.425±0.00 16.864±0.00 7.446±0.00 18.872±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IY CIL_0002IY_0001 CGP 17:42121431-42155044
CIL_0002J1 CIL_0002J1_0001 CGP 17:42124976-42181278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019317 Rab5c-002 protein_coding Mus_musculus 0 590
ENSMUST00000107364 Rab5c-001 protein_coding Mus_musculus 0 590
ENSMUST00000155843 Rab5c-004 protein_coding Mus_musculus 0 401
ENSDART00000129730 rab5aa-201 protein_coding Danio_rerio 0 315
ENSDART00000034124 rab5aa-001 protein_coding Danio_rerio 0 315
ENSMUST00000120190 Gm13991-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000000727 Rab5b-201 protein_coding Mus_musculus 0 259
ENSMUST00000155500 Rab5c-003 protein_coding Mus_musculus 0 206
ENSDART00000142127 rab5aa-002 retained_intron Danio_rerio 0 202

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