C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002J1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108774-ENSG00000089558 CGP 9606 17:42124976-42181278
GeneTranscriptPositionBiotype
ENSG00000089558 (KCNH4)
potassium voltage-gated channel, subfamily H (eag-related), member 4
ENST00000264661 (KCNH4-001) 42156895-42181278 protein_coding
ENST00000607371 (KCNH4-002) 42156891-42181081 protein_coding
ENSG00000108774 (RAB5C)
RAB5C, member RAS oncogene family
ENST00000346213 (RAB5C-001) 42124976-42155017 protein_coding
ENST00000393860 (RAB5C-201) 42124978-42155044 protein_coding
ENST00000546881 (RAB5C-007) 42128551-42154992 retained_intron
ENST00000547517 (RAB5C-002) 42125667-42154988 protein_coding
ENST00000550013 (RAB5C-003) 42130161-42155017 retained_intron
ENST00000550406 (RAB5C-008) 42128744-42154964 protein_coding
ENST00000550504 (RAB5C-004) 42128692-42136484 protein_coding
ENST00000551338 (RAB5C-006) 42126523-42128759 protein_coding
ENST00000552162 (RAB5C-005) 42128330-42136431 protein_coding
CIL_0002J1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019173-ENSMUSG00000035355 CGP 10090 11:100715009-100759942
GeneTranscriptPositionBiotype
ENSMUSG00000019173 (Rab5c)
RAB5C, member RAS oncogene family
ENSMUST00000019317 (Rab5c-002) 100715011-100738215 protein_coding
ENSMUST00000107364 (Rab5c-001) 100715009-100738215 protein_coding
ENSMUST00000155500 (Rab5c-003) 100719977-100738176 protein_coding
ENSMUST00000155843 (Rab5c-004) 100718500-100730215 protein_coding
ENSMUSG00000035355 (Kcnh4)
potassium voltage-gated channel, subfamily H (eag-related), member 4
ENSMUST00000107361 (Kcnh4-002) 100740376-100759740 protein_coding
ENSMUST00000107363 (Kcnh4-001) 100740382-100759942 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002J1_0001ENSG00000089558ENST00000264661ENST00000607371ENSG00000108774ENST00000346213ENST00000393860ENST00000546881ENST00000547517ENST00000550013ENST00000550406ENST00000550504ENST00000551338ENST00000552162CIL_0002J1_0002ENSMUSG00000019173ENSMUST00000019317ENSMUST00000107364ENSMUST00000155500ENSMUST00000155843ENSMUSG00000035355ENSMUST00000107361ENSMUST00000107363
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002J1_0001ENSG00000089558ENST00000264661ENST00000607371ENSG00000108774ENST00000346213ENST00000552162CIL_0002J1_0002ENSMUSG00000019173ENSMUST00000019317ENSMUST00000107364ENSMUSG00000035355ENSMUST00000107361ENSMUST00000107363
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089558 ENST00000264661 N/A 0.380±0.00 N/A 0.550±0.00 N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607371 0.066±0.00 N/A N/A 0.320±0.00 0.060±0.00 0.019±0.00 0.060±0.00 0.017±0.00 0.123±0.09 0.016±0.00 N/A 0.160±0.11 0.072±0.02 0.212±0.12
ENSG00000108774 ENST00000346213 110.678±0.00 104.506±0.00 6.055±0.00 55.313±30.82 44.330±33.70 36.008±25.76 14.338±11.10 73.228±58.38 32.857±22.91 56.995±49.17 11.947±6.88 95.300±56.69 128.177±20.88 60.831±20.74
ENST00000393860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552162 N/A N/A 10.893±0.00 21.966±0.00 13.198±0.00 11.425±0.00 N/A 16.864±0.00 N/A 7.446±0.00 N/A 18.872±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019173 ENSMUST00000019317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00 N/A N/A N/A
ENSMUST00000107364 88.161±27.82 93.874±9.16 31.869±7.81 39.149±14.96 77.036±15.52 109.274±24.20 10.543±5.40 133.891±43.55 46.585±30.43 75.595±7.27 12.190±3.38 87.034±49.08 36.013±16.69 16.462±1.55
ENSMUST00000155500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035355 ENSMUST00000107361 0.271±0.10 0.114±0.02 0.011±0.00 5.167±3.24 0.172±0.08 0.021±0.01 0.014±0.01 N/A 0.012±0.01 0.489±0.18 0.034±0.00 0.163±0.10 0.026±0.00 0.093±0.04
ENSMUST00000107363 0.173±0.00 0.150±0.08 0.025±0.00 3.680±0.00 0.215±0.11 0.010±0.00 N/A 0.058±0.00 0.026±0.00 N/A N/A 0.150±0.04 N/A 0.146±0.00

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