C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB5C, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019173 Rab5c 10090 - 11:100715009-100738215 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019317 Rab5c-002 100715011-100738215 protein_coding
  ENSMUST00000107364 Rab5c-001 100715009-100738215 protein_coding
  ENSMUST00000155500 Rab5c-003 100719977-100738176 protein_coding
  ENSMUST00000155843 Rab5c-004 100718500-100730215 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019317ENSMUST00000107364
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00 N/A N/A N/A
ENSMUST00000107364 88.161±27.82 93.874±9.16 31.869±7.81 39.149±14.96 77.036±15.52 109.274±24.20 10.543±5.40 133.891±43.55 46.585±30.43 75.595±7.27 12.190±3.38 87.034±49.08 36.013±16.69 16.462±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IY CIL_0002IY_0002 CGP 11:100713850-100738215
CIL_0002J1 CIL_0002J1_0002 CGP 11:100715009-100759942

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0006184 TAS GTP catabolic process
GO:0007032 IDA endosome organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0019003 ISS GDP binding
GO:0030100 IDA regulation of endocytosis
GO:0030139 IDA endocytic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026712 rab5c RAB5C, member RAS oncogene family protein_coding Danio_rerio
ENSG00000108774 RAB5C RAB5C, member RAS oncogene family protein_coding Homo_sapiens
ENSG00000267261 CTD-2132N18.3 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000468275} protein_coding Homo_sapiens

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